The largest database of trusted experimental protocols

8 protocols using ab199013

1

Immunophenotyping of Infiltrating Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-CD3 (Bioss bs-0765R), anti-CD4 (Abcam, ab11815), anti-CD5 (Bioss, bs1113R), anti-CD8 (Abbiotec, P0731), anti-CD11b (Abcam, ab75476), anti-CD45 (Abbiotec, ab08575), anti-TNF-α (Abcam, ab199013), anti-IL-17 (Abcam, ab79056), anti-IL-22 (Abcam, ab106773) and anti-IL-23 (Abcam, ab115759) were used as primary antibodies. Incubation time and dilutions of primary antibodies were optimized according to the manufacturers’ instructions. Positive (+) stained cells were calculated for each animal of the groups and expressed as mm2 with the help of Kameram image analysis software (Kameram 2.1; Argenit, Istanbul, Turkey).
+ Open protocol
+ Expand
2

Immunoblotting Analysis of Liver Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissues were homogenized and lysed in RIPA containing PMSF (Beyotine). The cellular lysates were clarified by centrifugation at 12,000 rpm for 15 min. Protein concentration in the lysate was determined using the Bradford method. Immunoblotting assays were performed using a standard protocol. Protein samples were resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Thereafter, the proteins were transferred onto PVDF membranes. After blocking in 5% non-fat milk, the membranes were probed with primary antibodies against TNF-ɑ (ab199013, dilution 1:1000), IL-6 (ab9324, dilution 1:1000), and HGF (ab83760, dilution 1:1000) (Abcam) and GADPH (EMM0215, dilution 1:1000; Elabscience). Protein bands were visualized using an enhanced chemiluminescence method, and analyzed using ImageJ software. Protein expression was normalized against GADPH. The gray ratio of the target bands to that of the internal reference bands was considered the relative expression of the target proteins.
+ Open protocol
+ Expand
3

Microglial Phenotype Characterization by ICC

Check if the same lab product or an alternative is used in the 5 most similar protocols
We also analyzed the phenotype of microglia at day 4–5 after isolation. Previously, light microscopy images were taken before staining with antibodies using an AxioObserver Z1 (Carl Zeiss, Jena, Germany). For immunocytochemistry (ICC), the cells were fixed in 4% buffered formalin, washed with 0.1% Triton X-100 in PBS and stained with GFAP (ab16997, Abcam, Cambridge, UK), Iba1 (ab5076, Abcam), TNF-α (ab199013, Abcam) and TGF-β (ab92486, Abcam) antibodies at a working dilution of 1:100 for 1.5 h at RT, then washed and stained secondary antibodies. For staining the appropriate Iba1, Alexa Fluor 488 conjugated anti-goat secondary antibodies ab150129 (Abcam), and for staining the appropriate GFAP, TNF-α and TGF-β, Alexa Fluor 647 conjugated anti-rabbit secondary antibodies A-31573 (Invitrogen, Waltham, MA, USA) were used. After incubation for 30 min at RT, the cells were counterstained with 40,6-Diamidino-2-phenylindole (DAPI) (10 mg/mL in PBS, Sigma, St. Louis, MI, USA) to visualize the nuclei. The results were analyzed using an LSM 780 Confocal Microscope (Carl Zeiss, Jena, Germany).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Bone Biomarkers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunostaining for tumor necrosis factor-α (TNF-α), RANKL and osteoprotegerin (OPG) was performed on 4-μm decalcified right distal femoral sections. Briefly, all sections were deparaffinized in xylene, rehydrated, and washed in PBS. The sections were then heated for 20 min in citrate buffer (pH 6.0) at 95°C and incubated with an anti-tumor necrosis factor-α (TNF-α) monoclonal antibody (1:100, catalog number: ab199013, Abcam, United States), anti-RANKL polyclonal antibody (1:200, catalog number: BA1323, Wuhan Boster, China), and anti-Osteoprotegerin (OPG) polyclonal antibody (1:500, catalog number: ab73400, Abcam, United States) overnight at 4°C. Phosphate-buffered saline (PBS) was used as a negative control. Then, the sections were incubated with secondary antibodies for 30 min at 26°C. 3,3′-Diaminobenzidine (DAB) staining and hematoxylin counterstaining were performed to visualize the expression of biomarkers. Immunohistochemical analysis was performed with Image-Pro Plus 6.0 software to evaluate immunostaining.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
We chose four sections per rat and performed immunohistochemistry. The primary antibodies used for anti-TNF-α were a mouse monoclonal antibody (ab199013, 1/25, Abcam, Cambridge, UK) and an anti-IL6 mouse monoclonal antibody (ab9324, 1/300, Abcam, Cambridge, UK). The slides were incubated at 4℃ overnight. Then, the specimens were incubated with a horseradish-peroxidase polymer-labeled goat anti-mouse immunoglobulin antibody (Histofine Simple Stain MAX-PO (M), #424134; Nichirei Corporation, Tokyo, Japan) for 30 min at room temperature. After that, the reaction was visualized by treatment with 0.003% hydrogen peroxide and 0.2 mg/ml 3,3'-diaminobenzidine (DAB) in 50 mm Tris-HCl, pH 7.6, for 2 min at room temperature. The counter-staining was performed with Mayer's hematoxylin (#30142, Muto Pure Chemicals Co. Ltd., Tokyo, Japan).
+ Open protocol
+ Expand
6

Immunofluorescence Analysis of Eye Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The eyes were harvested at defined times after RD. The animals were euthanized, and the eyes were enucleated. The whole eyes were fixed with 4% paraformaldehyde (PFA) solution in phosphate-buffered saline (PBS) for 24 h at 4 °C, dehydrated in 30% sucrose solution for 24 h at 4 °C, embedded in OCT at −20 °C, and sectioned at 10 μm using a Leica cryostat. Eye sections were fixed in 4% PFA/PBS for 10 min, washed with PBS twice and blocked for 1 h in 5% BSA in PBS containing 0.1% Triton-X (PBST) at room temperature. The primary antibodies were diluted in antibody dilution solution (1% BSA in PBST) in ratios from 1:100 to 1:1000 and used for incubation overnight at 4 °C. The secondary antibodies were diluted at 1:1000 in antibody dilution solution and applied for incubation for 2 h at room temperature. The primary antibodies used for immunofluorescence were LC3B (Cell Signaling Technology, 2775S, 1/1000), Atg5 (Abcam, ab78073, 1/100), and TNF-α (Abcam, ab199013, 1/100). The secondary antibodies used were Cy3 donkey anti-mouse IgG, Cy3 donkey anti-rabbit IgG (Jackson ImmunoResearch, 715-165-150, 711-165-152), Alexa488 donkey anti-mouse IgG, and Alexa488 donkey anti-rabbit IgG (Life Technologies, A16017, A16033). All images were obtained using a Zeiss LSM 780 confocal microscope. In each experiment, measurements were made on three eyes.
+ Open protocol
+ Expand
7

Quantitative Assessment of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
IL-8, TNF-α, CXCL5 and β-actin mRNA levels were determined by quantitative reverse transcription PCR (qRT-PCR)[21 (link)]. The primers used were as follows: IL-8 forward primer (5’- ATG ACT TCC AAG CTG GCC GTG GCT-3’) and reverse primer (5’-TCT CAG CCC TCT TCA AAA ACT TCT C -3’); TNF-α forward primer (5’- CGA GTG ACA AGC CTG TAG C -3’) and reverse primer (5’-CCT TCT CCA GCT GGA GAG C-3’); CXCL5 forward primer (5’-GAG AGC TGC GTT GCG TTT G-3’) and reverse primer (5’-TTT CCT TGT TTC CAC CGT CCA-3’); GAPDH forward primer (5’-ACCACAGTCCATGCCATCAC-3’) and reverse primer (5’-TCCACCACCCTGTTGCTGTA-3’). Sample input was normalized to β-actin mRNA expression. IL-8, TNF-α, CXCL5 and β-actin protein levels were determined by western blot analysis[22 (link)], using following antibodies: ab34100 (1:1000 dilution, abcam, Cambridge, MA) for IL-8, ab199013 (1:1000 dilution, abcam, Cambridge, MA) for TNF-α, ENA-78 (1:1000 dilution, Santa Cruz Biotechnology, Santa Cruz, CA) for CXCL5 and ab8226 (1:500 dilution, abcam, Cambridge, MA) for β-actin.
+ Open protocol
+ Expand
8

Quantification of Hepatic Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue sections were dewaxed, hydrated, and washed. After neutralization with 3% endogenous peroxidase and microwave antigen retrieval, slides were preincubated with blocking serum and then incubated overnight with antibodies against tumor necrosis factor (TNF)-α (ab199013, dilution 1:200), interleukin (IL)-6 (ab9324, dilution 1:200), and hepatocyte growth factor (HGF) (ab83760, dilutions 1:200) (Abcam). Three images of 5 representative fields were captured using a Canon EOS600D camera connected to a microscope at a magnification of × 200. Images were analyzed with Image-Pro Plus version 6.2 software (Media Cybernetics), using a special function called “measurement of integrated absorbance”. The integrated absorbance of positive staining of TNF-ɑ, IL-6, and HGF in each photograph was measured, and its ratio to total area of each photograph was calculated as density. The average integrated absorbance value (integrated absorbance/total area) of each slide (3 images) was used to represent a particular sample.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!