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3 protocols using e021020 01

1

DNA Damage Response Pathway Evaluation

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Primary antibodies used for Western blot and immunofluorescence were as follows: mouse anti-γH2AX (05-636, Millipore, 1:1000 for immunofluorescence), mouse anti-53BP1 (612523, BD Transduction Laboratories, 1:500 for immunofluorescence), mouse anti-RPA23 (ab2175, Abcam, 1:1000 for Western blot ), rabbit anti-phospho-RPA (ab109394, Abcam, 1:50000 for Western blot ), and mouse anti-β-actin (E021020-01, Earthox, 1:1000 for Western blot). Chemical agents used were as follows: RO3306 (Selleck), CDK2 inhibitor II (Selleck), Aphidicolin (Sigma), camptothecin (Selleck), Cisplatin (Selleck), and Olaparib (Selleck).
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2

Hippocampus Protein Expression Analysis

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Western blot was performed as described previously.22 (link) Hippocampi from both hemispheres were dissected. For Experiment 2, DG and CA1–3 regions were further separated according to an established protocol.32 Hippocampal tissues were homogenized in ice-cold lysis buffer and centrifuged at 10 000 r.p.m. for 20 min at 4 °C. Protein concentrations were determined using a bicinchoninic acid protein assay kit (Pierce, Rockford, IL, USA). Samples containing 20 μg of protein were resolved by 10% sodium dodecyl sulfate-polyacrylamide gels, and transferred onto polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). Membranes were labeled with rabbit anti-nectin-3 (1:2000; Abcam), mouse anti-actin (1:10 000; E021020-01, EarthOx, Millbrae, CA, USA) or mouse anti-GFP (1:20 000; sc-9996, Santa Cruz) overnight at 4 °C. Following incubation with horseradish peroxidase-conjugated secondary antibodies (1:2000, Sigma-Aldrich, St Louis, MO, USA) for 3 h at room temperature, bands were visualized using an enhanced chemiluminescence system (Pierce) and quantified with densitometry (Quantity One 4.2, Bio-Rad, Hercules, CA, USA). All results were normalized by taking the value of the control group as 100%. Each assay was repeated for at least three times.
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3

Protein Expression Analysis by Western Blot

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Western blot was performed as described previously [15 (link)]. MEC and hippocampal tissue from both hemispheres was dissected and homogenized in ice-cold lysis buffer and centrifuged at 10,000 rpm at 4 °C (20 min). Protein concentrations were determined using a bicinchoninic acid protein assay kit (Pierce, Rockford, IL, USA). Samples containing 20 μg of protein were resolved by 10% sodium dodecyl sulfate-polyacrylamide gels and transferred onto polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). Membranes were then labeled with primary rabbit anti-nectin1 (1:2000, Santa Cruz), rabbit anti-nectin3 (1:2000, Abcam), mouse anti-actin (1:10,000, E021020-01, EarthOx, Millbrae, CA, USA), mouse anti-beta-tubulin (1:10,000, E021040-01, EarthOx), or mouse anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 1:5000, E021010-01, EarthOx) antibodies at 4 °C (overnight). Following incubation with horseradish peroxidase-conjugated secondary antibodies (1:2000, Sigma-Aldrich, St Louis, MO, USA) at room temperature (3 h), bands were visualized using an enhanced chemiluminescence system (Pierce) and quantified by densitometry (Quantity One 4.2, Bio-Rad, Hercules, CA, USA). Each assay was repeated three times. Results were normalized by taking the mean value of the control group as 100%.
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