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34 protocols using u cmad3

1

Observation of INH Crystal Morphology

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INH crystal morphology was observed by optical microscopy (Olympus U-CMAD3, Japan). The size of the growing crystal seed was measured by using an optical polarizing microscope (Eclipse E200, Nikon) at regular time intervals.
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2

Calcium Imaging Setup for Microscopy

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The imaging setup consisted of a CCD camera (Olympus U-CMAD3) mounted to an upright microscope (Olympus BX51WI) equipped with a water immersion objective (Olympus, 10×/0.30). Calcium green-1 AM was excited at 475 nm (500 nm shortpass optical filter; xenon arc lamp, Polychrome V, Till Photonics), and fluorescence was detected at 490/515 nm (dichroic longpass/longpass). The setup was controlled by the software Tillvision version 4.6 (Till Photonics). Fourfold symmetrical binning resulted in image sizes of 344 × 260 pixels, with one pixel corresponding to an area of 4 µm × 4 µm.
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3

Anchorage-Independent Growth Assay

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To measure the anchorage-independent growth, cells were trypsinized. 1 × 105 cells were suspended in 1.4% agarose D-1 Low EEO (iNtRON Biotechnology, Seoul, Korea) growth medium containing 10% FBS, disposed onto 1 mL of a solidified base of growth medium containing 2.8% agarose. After 24 h, media containing 10% FBS was added to each well of six-well dish and renewed twice weekly. Colonies were scored one month after and all values were determined in triplicate. Photographs were taken with a phase-contrast microscope (Olympus CKX41 with integrated camera Olympus SC30, U-CMAD3, Tokyo, Japan).
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4

Assessing Cell Death using Vital Dyes

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Cell death was assessed using cell staining with acridine orange (AO) and ethidium bromide (EtBr), as described previously [24 (link)]. MCF-7 and MDA-MB-231 cells (0.3 × 106 cell/2.0 mL medium/well) were grown in 6-well plates for ~36 h and then treated with vit-D3 (50, 100, and 200 µM) or vehicle 0.5% DMSO (controls) for 48 h. Following this, cells were trypsinized to obtain a single-cell suspension. Trypsin was neutralized in a complete medium, and a 20 µL cell suspension was transferred to a different 1.5 mL microcentrifuge tube and incubated with EtBr (100 µg/mL) and acridine orange (100 µg/mL) mixture for 5.0 min. The stained cells were placed on slides and photographed using a fluorescence microscope (Olympus U-CMAD3) with fluorescein isothiocyanate (FITC) and tetramethylrhodamine isothiocyanate (TRITC) probes. Merged images with green (live) and orange (dead) cells were analyzed.
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5

Immunofluorescence Analysis of Muscle Capillary Density

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Several transverse 10 µm sections were obtained from muscle samples mounted in OTC. Sections were collected at –20 to 22°C on the surface of a polarized glass slide. Cryosections were fixed with methanol in ice for 15 min, washed three times (5 min each) in PBS (NaCl 136 mm, KCl 2 mm, Na2HPO4 6 mm, KH2PO4 1 mm) at room temperature (RT) and incubated in 1% Triton X‐100 in PBS for 30 min (RT). Cryosections were then incubated with blocking reagents (4% BSA in 1% Triton X‐100 in PBS + 5% goat serum) for 30 min (RT), raised with PBS (three times for 5 min each) and probed with anti‐CD31 (dilution 1:100; Abcam, Cambridge, UK) overnight at 4°C. After three washes (5 min each) in PBS, cryosections were incubated with Alexa‐Fluor 488 anti‐mouse (dilution 1:200; Abcam) for 60 min at room temperature. Finally, the samples were probed with anti‐dystrophin (dilution 1:500 dilution) for 60 min at room temperature and then with Alexa‐Fluor 488 anti‐rabbit (dilution 1:200; Abcam) for 60 min at room temperature. Fluorescence intensity was visualized by microscopy (U‐CMAD3; Olympus). In total, 125–150 fibres were measured in each sample. Capillary density was defined as total number of capillaries per CSA of the associated muscle fibres (Hepple et al., 2000 (link); Hoppeler et al., 1981 (link); Mathieu‐Costello et al., 1991 (link), 1988 (link), 1992 (link)).
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6

Semen Analysis Protocol Standardization

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Semen samples were collected at the clinic by masturbation into a sterile plastic container. The samples were liquefied for 30 min in 37 °C before analysis. Macroscopic examination of semen was performed according to the 5th edition of WHO laboratory manual for the examination and processing of human semen [17 ]. Microscopic measurements of the sperm count, concentration, motility and morphology were determined with the use of computer-aided semen analysis (CASA). The basic components of the system were a bright field microscope (Olympus CX41, Tokyo, Japan), a digital camera to capture images (Olympus U-CMAD3), and a computer with software installed (SCA®Microptic S.L., Barcelona, Spain). The WHO [17 ] cut-off points were used to evaluate abnormal values of semen quality parameters (Table 1). All analyses were performed by an experienced technician.
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7

Examining Fungal Extract Effects on Biofilms

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Light microscopic technique to examine the effects of the fungal extract on the initial and pre-formed biofilms was performed according to Taufiq and Darah (14 (link)). The biofilm formation was examined under the light microscope attached with a digital camera (Olympus U-CMAD3).
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8

Microscopic Anatomical Analysis of Floral Structures

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Six individual flowers from six different plants per species were fixed in a formalin acetic acid–alcohol solution (37% formaldehyde, glacial acetic acid, 95% ethanol, and deionized water in a 10:5:50:35 mixture) for microscopic analysis. The samples (floral stem, petal, lip, dorsal sepal, and synsepal) were cleaned with water before anatomical analysis. Thin transverse cross-sections (20–30 μm) of the samples were made with a Microtome Cryostat (CM3050S; Leica, Germany); the sections were stained with 1% fuchsine for 4–5 s, mounted on glass microscope slides, examined, and photographed with a light microscope (U-CMAD3; Olympus Inc., Tokyo, Japan). Epidermal thickness; exodermal thickness; endodermal thickness of the floral stem; upper epidermal thickness; lower epidermal thickness; mesophyll thickness of the petals, lips, dorsal sepals, and synsepals; and the whole petal, lip, dorsal sepal, and synsepal thickness were determined with the ImageJ program.
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9

Muscle Fibre Cross-Sectional Area Measurement

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Muscle fibre CSA was determined from several transverse sections (10 µm thick) obtained from muscle samples and probed with anti‐dystrophin antibody. Fluorescence images were visualized by microscopy (U‐CMAD3; Olympus, Tokyo, Japan). Fibre CSA was measured with ImageJ (NIH, Bethesda, MD, USA) and expressed in square micrometres. In total, 125–150 fibres per sample were measured.
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10

Hoechst 33258 Staining for Cell Viability

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The cells were plated in six-well plates and incubated for 24 h. Concentrations of PZH were then added to each well of the three experimental groups, and then incubated for 24 h together with the negative control group. Next, the cells were washed three times with PBS and stained with Hoechst 33258 (1 mg/l) for 15 min at 37°C. Images of the Hoechst 33258 fluorescence were then captured using inverted fluorescence microscopy (U-CMAD3; Olympus, Tokyo, Japan), prior to washing the cells three times with PBS. The percentage of positively-stained cells was calculated according to the images.
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