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3 protocols using cd8 fitc clone rpa t8

1

SARS-CoV-2 Omicron Immune Cell Profiling

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Freshly isolated PBMCs (1 × 105) from Omicron COVID-19 cases (n = 19) were used for surface staining of NK cells, NKT-like cells, B cells, T cells, memory B, and memory T cells using cocktail of antihuman antibodies (CD19 PercpCy5.5 (clone HB-19), CD27 PECy7 (clone M-T271), CD3 APCH7 (clone SK7), CD4 BV480 (clone SK3), CD8 FITC (clone RPA-T8), CD45RA PECy7 (clone HI 100), CD62L APC (clone DREG-56), CCR7 PE (clone 2-LI-A) and NK Tritest (CD3 FITC: clone SK7, CD56 PE:clone NCAM 16.2, CD16 PE: clone B73.1, CD 45 RA: C8Mab-1)) all from BD Biosciences following a previously described protocol [18 (link)–23 (link)]. PE-Cy™7 Mouse IgG1 κ Isotype Control (BD Biosciences, San Jose, CA, USA) was used as the negative control.
Briefly, PBMCs were incubated with fluorochrome-tagged antihuman monoclonal antibodies for 30 min in the dark. After washing, the cells were fixed with 2% paraformaldehyde. The cells were acquired on FACS Aria II (BD Biosciences, San Jose, CA, USA). For each experiment, 50,000 events were acquired within the lymphocyte gate with appropriate isotype control. Data were analyzed using FACS Diva software (Becton Dickinson, San Jose, CA, USA), and results are expressed as the percentage of positive cells in the gated population. The gating strategy is depicted in Figure 1.
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2

Comprehensive Cytometry Antibody Panel

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The anti-mouse antibody CD45-PE-Dazzle5 clone 30-F11 was purchased from BioLegend (San Diego, CA, USA) and used for flow cytometry. The following anti-human antibodies were used for flow cytometry and were all acquired from BD Biosciences (San Jose, CA, USA): HLA-DR-BV510 clone L243, CD3-BV605 clone UCHT1, CD20-BV650 clone 2H7, CD16 (FcγRIII)-BV117 clone B73.1, CD45-BV785 clone H130, CD8-FITC clone RPA-T8, CD33-PE clone WM53, CD14-PerCP-Cy5.5 clone HCD14, CD45RA-PE-Cy7 clone HI100, CD56-allophycocyanin clone QA17A16, CD4-Alexa Fluor 700 clone SK3. The following anti-human antibodies were used for in vivo depletions: From Bio-X Cell (Lebanon, NH, USA): anti-human CD3 clone OKT3, anti-human CD4 clone OKT4, anti-human CD8 clone OKT8; From Thermofisher: mouse IgG2a isotype. The anti-SARS-CoV-2 (2019-nCoV) Spike RBD-mFc clone #57 used as a control for neutralization assays was acquired from Sino Biologicals.
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3

Multiparameter flow cytometry immune cell sorting

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Following phosphate-buffered saline (PBS) washing, single cell suspension from tumor tissue was washed and resuspended in 100 µL of flow cytometry staining buffer (PBS with 1% fetal calf serum (FCS) and 0.1% sodium azide). Fc receptor (FcR) Blocking Reagent, human (Miltenyi Biotec, Bergisch Gladbach, Germany) was used to block FcR. Cells were stained with cell surface antibodies against CD3-APC-Cy7 (clone SK7, BD Pharmingen, San Jose, USA), CD4-PE (clone RPA-T4, BD Pharmingen), CD8-FITC (clone RPA-T8; BD Pharmingen), CD33-APC (clone WM53, BD Pharmingen) and 7-AAD viability dye (eBioscience, San Diego, USA) to exclude dead cells and gate on live cells.
Cells were washed with flow cytometry staining buffer then re-suspended in Pre-Sort buffer (BD Biosciences). BD FACSAria III SORP cell sorter on BD FACSDiva software (BD Biosciences) was used for sorting pure CD8+ (7AADCD3+CD4CD8+CD33), CD4+ (7AADCD3+CD4+CD8CD33) and CD33+(7AADCD3CD4CD8CD33+) populations. The sorting strategy is shown in figure 1A. We used stringent gating strategy and applicable measures to ensure minimal sorter-induced cell stress. High purities of sorted immune cell populations were always checked and confirmed. FlowJo V.10 software (FlowJo, Ashland, USA) was used for data analyzes.
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