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Transscript all in one first strand cdna synthesis supermix for qpcr one step gdna removal kit

Manufactured by Transgene
Sourced in China

The TransScript® All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kit is a laboratory equipment product that facilitates the synthesis of first-strand cDNA from total RNA. It includes a one-step process for the removal of genomic DNA.

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14 protocols using transscript all in one first strand cdna synthesis supermix for qpcr one step gdna removal kit

1

Quantifying Gene Expression in Liver Cells

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Total RNA was extracted from LX2 cells, mouse liver tissues, or human liver samples using Trizol reagent (Sigma, Saint Louis, MO, USA). Total RNA was subject to reverse transcription to cDNA using the TransScript All-in One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kits provided by TransGen Biotech Co., Ltd. (Beijing, China) according to the protocols. Real-time PCR was performed using the SYBR Green Master Mix (Vazyme Biotech Co., Ltd., Nanjing China) according to the protocol. Fold changes in the mRNA levels of target genes were related to the invariant control glyceraldehyde phosphate dehydrogenase (GAPDH). The primers (GenScript Co., Ltd., Nanjing, China) are listed in Additional file 1: Table S1.
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2

RNA Extraction and qPCR Analysis Protocol

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A commercial E.Z.N.A. Plant RNA kit (Omega Bio-Tek, Norcross, GA, USA) was used to isolate the total RNA of samples. TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix (TransGen Biotech, Beijing, China) and TransScript All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One Step gDNA Removal) kits (TransGen Biotech, Beijing, China) were used for cDNA synthesis. Gene expression was detected by quantitative real-time PCR using TransStart Top Green qPCR SuperMix (TransGen Biotech, Beijing, China). The genes encoding glyceraldehyde-3-dehydrogenase (FfGAPDH) and Ras family Small GTPase (FfRas) were used as the reference genes [38 (link)]. The qPCR primers were designed using Primer Premier 6.0 and synthesized by Sangon Biotech Co., Ltd. (Shanghai, China) (Table S2). The relative expression levels were calculated by the 2−ΔΔCt method [39 (link)].
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3

Quantitative Real-Time PCR Analysis of HSC and Liver Gene Expression

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Total RNA was prepared from HSCs or liver tissues using Trizol reagent (Sigma, Saint Louis, MO, USA). The integrity of total RNA was assessed using 1.5% agarose gel electrophoresis for detecting the 28S and 18S rRNA bands (2:1 ratio), and the A260/A280 value (1.9-2.0) was used to evaluate the purity of total RNA. Total RNA was subject to reverse transcription to cDNA using the TransScript All-in One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kits provided by TransGen Biotech Co., Ltd. (Beijing, China) according to the protocols. The contaminating genomic DNA in RNA templates was eliminated using the gDNA Remover contained in the reverse transcription kits. Real-time PCR was performed using the SYBR Green Master Mix (Vazyme Biotech Co., Ltd., Nanjing China) according to the protocol. Fold changes in the mRNA levels of target genes related to the invariant control glyceraldehyde phosphate dehydrogenase (GAPDH) were calculated as suggested 19 (link). The primers designed to span gene introns (GenScript Co., Ltd., Nanjing, China) are listed in Table S2.
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4

Total RNA Isolation and cDNA Synthesis

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Total RNA was isolated from the frozen tissues using the EasyPure® Plant RNA Kit (TransGen Biotech, Beijing, China) and quantified by a NanoDrop 2000c spectrophotometer (Thermo Scientific, Waltham, MA, USA). Only RNA samples with A260/A280 of 1.9–2.1 were used for cDNA synthesis. RNA integrity was analyzed by 1% agarose gel electrophoresis. The first-strand cDNA was synthesized with 1.0 μg total RNA in a 20 μL reaction system according to the TransScript® All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kit (TransGen Biotech, Beijing, China). All the cDNA samples were stored at −20 °C.
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5

Quantitative mRNA Expression Analysis

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Total mRNA was extracted from sorted GFP+ cells using MagZol™ Reagent (R4801-03, Magen) according to the manufacturer’s instructions. mRNA purity and quantity were determined with NanoDrop (Thermo Scientific) before qPCR analysis. For qRT-PCR, equal amounts of mRNA samples were reverse transcribed into cDNA using the TransScript All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kit (AT341, Transgen). Quantitative real-time PCR was performed on Bio-Rad CFX96 Touch™ Real-Time PCR Detection system using SYBR Green I Master Mix reagent (11203ES03, YEASEN).
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6

qRT-PCR Assay for PPP2R1A Gene

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We executed qRT-PCR assay according to the methods described previously [33 (link)]. In brief, we extracted total RNA from samples using RNAfast 200 Kit (Fastagen, China, No. 220010). cDNA was synthesized by RNA (1 μg) using a TransScript® All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kit (Transgen, China, No. AT341). Amplification and semiquantification of transcripts were performed using the SYBR Green mix (Biomake) and specific primers on a 7500 Fast Real Time PCR System (Applied Biosystems, Life Technologies). The primers sequences were as follows: PPP2R1A (F: ACCGCATGACTACGCTCTTCTG, R: TTGAAGCGGACATTGGCAACCG).
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7

Total RNA Extraction and cDNA Synthesis

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The total RNA of the samples was extracted using the E.Z.N.A.™ Plant RNA kit (from Omega Bio-Tek, Norcross, GA, USA) according to the common sample extraction method. The first strand cDNA was synthesized using the TransScript All-in-one First-Strand cDNA Synthesis SuperMix for qPCR (One Step gDNA Removal) kit (from TransGen Biotech, Beijing, China) and the TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix kit (from TransGen Biotech) according to the manufacturer’s instructions.
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8

Validating RNA-seq Results by qRT-PCR

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To validate the RNA-seq results, six DEGs were selected and analyzed by qRT-PCR. The primer pairs were designed using Primer 5.0 (Supplementary Table S1). β-tubulin was selected as the internal reference gene (F: 5’ – CTTTCTTGCATTGGTACACGC – 3’; R: 5’ – TCGCCTTCTTCCTCATCGGCA – 3’).
Total RNA was isolated as described above. According to the manufacturer’s instructions, RNA was reverse-transcribed using a TransScript® All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) kit (TransGen Biotech, Beijing, China). Then, 2 X RealAtar Green Fast Mixture with ROX (GenStar BioSolutions, Beijing, China) was used to perform qRT-PCR on the QuantStudio 6 Flex Real-Time PCR System (Thermo Fisher Scientific, Massachusetts, USA). The reaction system and conditions of qRT-PCR were conducted according to Fu et al. [29 (link)]. The relative expression of genes was determined using the 2− ΔΔCt method [114 (link)].
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9

Gastrocnemius Muscle Gene Expression Analysis

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The expression levels of atrogin 1 and MU-RF1 mRNA in gastrocnemius were detected by RT-qPCR. The right gastrocnemius tissues were lysed in 1 ml TRIzol to extract the total RNA according to the manufacturer's instructions, and RT was performed. The atrogin 1, MU-RF1 and GAPDH primers details and products fragments as listed in Table I. cDNA was synthesized using the TransScript All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) kit (Beijing TransGen Biotech Co., Ltd., Beijing, China), the concs were 4 µl total RNA; 1.6 µl 5X TransScript All-in-One SuperMix for qPCR; 0.4 µl gDNA Remover; and 2 µl RNase-free water, under the conditions of 37°C for 15 min and 85°C for 5 sec. Subsequently, fluorescence qPCR was performed with reactions consisting of 18.5 µl H2O, 2.5 µl 10X SYBR green PCR buffer (SYBR® Fast qPCR Mix; Takara Biotechnology Co., Ltd., Dalian, China), 0.5 µl dNTPs, 0.5 µl Taq, 0.5 µl forward primer (10 pmol/µl), 0.5 µl reverse primer (10 pmol/µl) and 2 µl cDNA, and incubation at 93°C for 2 min, followed by 40 cycles of 93°C for 15 sec, 55°C for 25 sec and 72°C for 25 sec. Finally, the cycle threshold (Cq) values were calculated to analyze the relative expression level (ΔCq=Cqtarget gene−Cqreference gene; ΔΔCq=ΔCq−ΔCqmax) (9 (link)).
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10

RT-qPCR and Semi-quantitative RT-PCR Analysis

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The cDNA was synthesized according to the manufacturer’s protocol of TransScript® All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (One-Step gDNA Removal) Kit (TransGen, Beijing, China). The gene fragments were amplified using 2 x TOROGreen® HRM qPCR Master Mix (TOROIVD Technology, Shanghai, China) and the MP-specific primer for RT-qPCR analysis is listed in Table S1. The N. benthamiana Ubiquitin C (UBC) and O. sativa actin genes were used for internal reference control. The ABI QuantStudio5 Real-Time PCR System (Thermo Scientific, Waltham, USA) was used for the reactions and the results were calculated according to the ΔΔCT method. Semiquantitative RT-PCR was used to measure the expression of CP using the primers listed in Table S1.
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