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In cell analyzer 6000

Manufactured by INCELL

The IN Cell Analyzer 6000 is a high-content, high-throughput imaging system designed for automated cellular analysis. It captures and analyzes multi-parameter images of live or fixed cells, enabling researchers to study a wide range of cellular processes and phenotypes.

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17 protocols using in cell analyzer 6000

1

Quantification of Azelnidipine-Induced ERK1/2 Activation

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The slides were put in a 24-well plate, and then 2 × 104 KYSE150 or KYSE450 cells were seeded in each well. After 16–18 h, cells were treated with various concentrations of azelnidipine for 24 h. The medium was then aspirated from the plate, and the cells were fixed with 4% paraformaldehyde in PBS for 30 min. The cells were washed three times with PBS and incubated primary antibody (p-ERK1/2 T202/Y204 and ERK1/2 1:50) overnight at 4°C. Next, slides were incubated with the fluorescent secondary antibody (1:50) for 1.5–2 h in the dark. After several washes, slides were stained with DAPI (1:10,000) for 5 min at 37°C. The images were captured and analyzed by using IN Cell Analyzer 6000 software.
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2

Vortioxetine Hydrobromide Dose-Response on STAT3 Phosphorylation

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The slides were put in a 24-well plate, and then 2 × 104 GC cells were seeded in each well. After 16–18 h, cells were treated with various concentrations of vortioxetine hydrobromide for 24 h. The medium was then aspirated from the plate and the cells were fixed with 4% paraformaldehyde in PBS for 30 min. The cells were washed three times with PBS and incubated primary antibody (p-STAT3 Y705, STAT3 1:50) overnight at 4 °C. Next, slides were incubated with the fluorescent secondary antibody (1:50) for 1.5–2 h in the dark. After several washes, slides were stained with DAPI (1:10,000) for 5 min at 37 °C. The images were captured and analyzed by IN Cell Analyzer 6000 software.
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3

Senescence Induction and Evaluation

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Ercc1−/− MEFs were passaged 5 times at 20% O2 to induce senescence then seeded at 5000 cells per well in 96 well plates at least 6 h prior to treatment. Following the addition of drugs, the MEFs were incubated for 24–48 h at 20% O2. Subsequently SA-β-gal activity was measured in three independent experiments, as previously described [49 (link)]. Briefly, cells were washed with PBS then 10 μM C12FDG added in fresh culture medium and incubated for 2 h. Ten min prior to analysis, 2 μg/mL Hoechst dye was added. An IN Cell Analyzer 6000 was used to quantitate total number of viable cells (Hoechst+) and the number of senescent cells (C12FDG+). All samples were analyzed in duplicate with 3–5 fields per well and reported as the mean ± S.D. Senotherapeutic activity was confirmed in human fibroblasts (IMR90). The cells were obtained from American Type Culture Collection (ATCC) and cultured in EMEM medium with 10% FBS and antibiotics. To induce senescence, the cells were treated for 24 h with 20 μM etoposide. Two days after etoposide removal, ~70% of the cells were SA-β-gal+. Cells were treated for 48 h with different concentrations of fisetin (1–15 μM) and the percentage of SA-β-gal+ cells was determined using C12FDG, as described above.
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4

Quantifying Mitochondrial ROS Levels

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The level of ROS was assessed as described previously [19 (link)]. Briefly, mitochondrial superoxide was quantified by staining with 5 μM MitoSox red (Thermo Fisher Scientific Inc., Waltham, MA, USA) for 15 minutes. Mitochondria were stained with 100 nM Mitotracker Green FM (Thermo Fisher Scientific Inc.) for 15 minutes. The MitoSox/Mitotracker signal ratio was used to assess the ROS level per mitochondria. All images were collected with an IN Cell Analyzer 6000.
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5

Azelnidipine Inhibits Anchorage-Independent Growth

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KYSE150 and KYSE450 cells (8,000 cells/well) were seeded in 10% FBS and 0.3% agar in the top gel, which was treated with various concentrations of azelnidipine (0, 1, 2.5, 5, and 10 μM). After incubation for 7 days, the colonies were photographed by IN Cell Analyzer 6000.
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6

Assessing iNeuron Viability in Conditioned Media

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Conditioned media was collected from iAstrocytes treated with vehicle control or IL-1α+TNF+C1q for 24 hours, spun down at 300 g for 10 min to remove dead cells, and transferred to day 17 iNeurons after removing the original iNeuron media. Unconditioned ScienCell Astrocyte Media was used as a negative control. After 72 hours, iNeuron viability was assessed by adding 10 ug/mL Hoechst and 1 μΜ TO-PRO-3 (ThermoFisher Scientific cat. no. T3605) in DPBS, incubating for 10 min at 37 °C, and then imaging on an IN Cell Analyzer 6000, using a 10X 0.45 NA objective, 2×2 binning, environmental control set to 37 °C and 5% CO2, an aperture width of ~1 Airy unit, 200 ms exposure, and 4–9 fields per well. The percent of dead neurons (stained by TO-PRO-3) was calculated after image processing and segmentation with CellProfiler (see Data Analysis section).
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7

Clonogenic Assay for Cell Survival

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On the day of irradiation, cells were detached, viable cell concentration determined with a hemocytometer, and seeded at 100 cells/well. The cells were allowed to attach and normalize in culture for 8–10 h before irradiation. Plates were transferred directly from the incubator to the holder apparatus, promptly irradiated, and immediately returned to culture. Control plates were sham-irradiated. Two plates per exposure were irradiated, resulting in 16 replicates for each dose-yd combination. Colonies were allowed to form for a cell line-specific amount of time (H460: 5.5 days; H1437: 7.5 days) depending on population doubling time. Cells were then stained with a 0.5% crystal violet in ethanol solution. Plates were imaged by the Texas A&M Institute of Biosciences and Technology High Throughput and Screening Center on an INCell Analyzer 6000. GE Developer software was used to score colonies consisting of at least 50 cells.
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8

Oxidant Levels in iPSC-Derived Neurons

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We estimated oxidant levels in control and MSA iPSC-derived neurons (method 2) using CellROX Green, a fluorogenic probe for measuring oxidative stress in live cells. Adherent cells were incubated with 5 µM CellROX for 30 min at 37 °C in the dark and washed once with PBS. iPSC-derived neurons were fixed with 4% paraformaldehyde and subjected to immunocytochemical analyses using the anti-βIII-tubulin antibody. βIII-tubulin-positive cells or βIII-tubulin/CellROX-double-positive cells were counted using IN Cell Analyzer 6000. Percentages of CellROX-positive neurons were defined as the number of βIII-tubulin- and CellROX-double-positive cells divided by the number of βIII-tubulin-positive cells.
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9

Cell Seeding and Nuclei Analysis

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We seeded the cells at 20 000 cells per well in 96-well plates coated with fibronectin. Later, after 2 h incubation at 37°C, we washed the cells twice with PBS and stained them with Hoechst 33 342. We analyzed the number of nuclei by IN Cell Analyzer 6000.
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10

Quantifying iPSC-Derived Neuronal Populations

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The iPSC-derived neurons of each method were fixed and subjected to immunocytochemical analyses using the anti-βIII-tubulin antibody. βIII-tubulin-positive cells were counted using IN Cell Analyzer 6000. Neuronal population was defined as the number of βIII-tubulin-positive cells divided by the number of nuclei.
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