The largest database of trusted experimental protocols

8 protocols using telaprevir

1

Hepatitis C Virus Infection Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antiviral agents included two active site protease inhibitors telaprevir (Selleckchem, Houston, TX, USA) and boceprevir (ChemScene, Monmouth Junction, NJ, USA), NS5A inhibitor daclatasvir (Selleckchem), two nucleotide NS5B polymerase inhibitors, sofosbuvir (Advanced Chemblocks, Burlingame, CA, USA) and 2′-C-methylcytidine (US Biological, Salem, MA, USA), host-targeting cyclophillin inhibitor cyclosporin A (Sigma-Aldrich, St Louis, MO, USA) and entry-inhibitor (S)-chlorcyclizine (NCATS, Bethesda, MD, USA).
The HCVcc-Luc infectious virus consisted of a full-length J6/JFH-1 HCV with insertion of a luciferase reporter gene at the 3′ end of the p7 gene [16 (link)].
Huh7.5.1 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Thermo Fischer Scientific, Waltham, MA, USA) supplemented with 10% fetal bovine serum (FBS; Serum Source International, Charlotte, NC, USA), 100 IU/ml penicillin, and 100 μg/ml streptomycin in 5% CO2, at 37°C. A stably expressing Con1b replicon cell line with luciferase reporter under the direction of 5′-NTR for quantification described previously [21 (link),22 (link)] was grown in the same condition as Huh7.5.1 cells with the addition of 500 μg/ml G-418.
+ Open protocol
+ Expand
2

Evaluating Antiviral Drug Synergies

Check if the same lab product or an alternative is used in the 5 most similar protocols
HCV-Luc infection and ATPlite assays were carried out in 96-well plates in the presences of the compound of interest titrated in vertical and the known antiviral drug titrated in horizontal.13 (link),22 The known antiviral drugs include ribavirin (Sigma-Aldrich), sofosbuvir (Advanced Chemblocks), telaprevir (Selleckchem), daclatasvir (Selleckchem), cyclosporin A (Sigma-Aldrich), and boceprevir (ChemScene). Two independent mathematical models, the Bliss independence model and the Loewe additivity model, were used to predict the theoretical additive, synergistic, or antagonistic effects. By the Bliss independence model, log volumes of synergistic or antagonistic effect were calculated with the MacSynergy program. By the Loewe additivity model, combination indices were calculated at or near the EC50 values of the compound and the antiviral drug when tested alone with CalcuSyn program (Biosoft).
+ Open protocol
+ Expand
3

FRET-Based Main Protease Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The kinetic assays were implemented using the FRET substrate (FRET-S), Dabcyl-KTSAVLQ↓SGFRKM-E(Edans)-NH2 (BPS Bioscience, United States), and standard covalent inhibitors GC-376, PF-00835231, boceprevir, telaprevir (Selleckchem, United States), and thimerosal (Serva). FRET-S contains a main-protease cleavage site (indicated by the arrow in the sequence above) and was utilized as the substrate in the FRET-based cleavage assay. Stock solutions of the inhibitors were prepared in DMSO (final concentration 5.0 mM).
+ Open protocol
+ Expand
4

Synthesis of MG-78 and MG-131 Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Boceprevir was purchased from Selleckchem. Telaprevir for biochemical experiments was from Selleckchem; for X-ray crystallography, material from Adooq Bioscience was used. The syntheses of MG-78 and MG-131 are described in the Section 2 “Results” and further below. PF-07321332 (nirmatrelvir) was custom-synthesized by Tocris (Bio-Techne), following the protocol in [32 (link)].
+ Open protocol
+ Expand
5

Optimized NS3 Inhibitor Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Asunaprevir, boceprevir, danoprevir, MK-5172 (a.k.a., grazoprevir), and simeprevir were from MedChemExpress. Telaprevir was from Selleck Chemicals. BILN-2061 was a gift from Roger Tsien and Stephen Adams (UC San Diego). Concentrated NS3 inhibitor stocks were dissolved in DMSO at concentrations between 3 – 10 mM and diluted into cell culture media at the indicated working concentrations.
+ Open protocol
+ Expand
6

HCV Replication Assay with Electroporation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Huh-7 cells were electroporated with 5 µg of in vitro transcribed SGR RNA as done in the HCV replication assay. Electroporated cells were seeded in half of a 96-well plate per drug with a density of 3 × 104 cells per well. At 5 h.p.e., standard cell culture medium was exchanged to DMEM complete containing 10% FCS, a constant end concentration of 0.01% DMSO and serial dilutions of telaprevir (S1538, Selleckchem), daclatasvir (S1482, Selleckchem), and cyclosporin A (C988900, Toronto Research Chemicals). In the case of the Intron A solution (Merck Sharp & Dome GmbH), serial dilutions in DMEM complete containing 10% FCS did not require the addition of DMSO as a solvent control. After 48 h of incubation, cell culture supernatant was removed and cells lysed on the plate by addition of 35 µL/well of luciferase lysis buffer (1% Triton X-100, 25 mM diglycine, 15 mM MgSO4, 4 mM EGTA, and 1 mM DTT). Cell lysates were stored at −20°C until luciferase measurement was performed.
+ Open protocol
+ Expand
7

Hepatitis C Virus Inhibition Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Asunaprevir, boceprevir, dasabuvir, and mericitabine were purchased from MedChem Express (Monmouth Junction, NJ, USA). Telaprevir, ledipasvir, and daclatasvir were purchased from Selleckchem (Houston, TX, USA). Ombitasvir was purchased from Clearsynth (Lotus Business Park, Andheri West, India). Simeprevir was obtained from ApexBio (Boston, MA, USA). The PRK2 inhibitor HA1077 was purchased from Sigma-Aldrich (Saint Louis, MO, USA) or Selleckchem. The siRNAs used for depletion of PRK2, ROCK1, and ROCK2 and the scrambled control siRNA (siCtrl) were described previously21 (link). siRNAs were transfected into cells using Lipofectamine RNAiMAX (Invitrogen, CA, USA). PKH67 dye was obtained from Sigma-Aldrich and used for HCV particle labeling according to the manufacturer’s protocol. The following antibodies were used: a mouse monoclonal anti-HCV core antibody (clone C7–50) from Abcam (Cambridge, UK); rabbit polyclonal anti-PRK2 and p-PRK2(Thr816) antibodies from Cell Signaling Technology (Danvers, MA, USA); goat polyclonal anti-pPRK2(Thr816), and mouse monoclonal anti-ROCK1 (4H247) and ROCK2 (30-J) antibodies from Santa Cruz Biotechnology (Santa Cruz, CA, USA); and Alexa fluor488 goat anti-mouse IgG antibody from Invitrogen.
+ Open protocol
+ Expand
8

Subcutaneous Bioluminescence Imaging of IFN-β Reporter Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Huh.7.5 cells were either mock transfected or transfected with the plasmids pFK;i341NeoEI-NS3-NS5B/JFH1 (SGR2) or pUC-pSGR-JFH1/_GDD (pUCΔGDD). For inhibitor treatments, 4 h after transfection a medium change was performed and 1 μM Telaprevir (Selleckchem) was added to the cells. After 72 h, the cells were harvested, washed once with PBS and resuspended as 5x107 cells/mL in PBS. IFN-β+/Δβluc reporter mice were anesthetized with isoflurane, and 5x106 cells were subcutaneous (s.c.) injected into the flanks of the mice. 100 μl luciferin (PerkinElmar) (30 mg/mL in PBS)/20 g mouse weight was intravenously (i.v.) injected at the indicated time points and the mice were immediately analyzed using the IVIS Spectrum CT (PerkinElmer). The acquired images were analyzed and quantified using the Living Image 4.3.1 software (PerkinElmar).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!