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5 ethynyl 2 deoxyuridine edu assay

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5-ethynyl-2′-deoxyuridine (EdU) assays are a tool used to detect and quantify DNA synthesis in cells. EdU is a thymidine analog that is incorporated into replicating DNA during the S-phase of the cell cycle. The assay uses a copper-catalyzed click chemistry reaction to covalently attach a fluorescent dye to the EdU, allowing for the visualization and analysis of newly synthesized DNA.

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4 protocols using 5 ethynyl 2 deoxyuridine edu assay

1

In Situ Cell Proliferation Analysis

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Cell proliferation in situ was analyzed with 5-ethynyl-2′-deoxyuridine (EdU) assays from Invitrogen. EdU is a thymidine analogue and incorporated into the DNA of dividing cells. Mice were injected intraperitoneally with 100 μg of EdU in PBS on day 6 after wounds and then the skin specimens were collected one day later20 (link). Two specimens were excised from each wound, one from the center of the wound bed and the other from uninjured adjacent skin served as reference such that a total of 4 specimens were collected from each mouse. The skin specimens were formalin-fixed, embedded in paraffin, and cut into 5μm thick sections. For EdU staining, paraffin in the tissue sections was removed and the tissue was stained with the Click-iT® EdU Alexa Fluor® 488 Imaging Kit (Invitrogen, USA), counterstained with DNA dye DAPI (4′,6-diamidino-2-phenylindole) provided in the kit per the manufacturer’s instruction. The stained sections were imaged by confocal microscopy (Olympus FV1000, Olympus, Japan) and analyzed by Image J software. Percentages of EdU-positive cells relative to a total number of cells were obtained by manually counting the number of EdU-positive green cells and DAPI-positive blue cells in 100 microscopic fields randomly selected in each sample in a sample-blind manner.
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2

EdU Labeling and Tracking of Neuroblasts

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5-ethynyl-2′-deoxyuridine (EdU) assays (Invitrogen) was used to label cells in S-phase. 2nd and early 3rd Instar larvae with the genotype insc-Gal4; UAS-mCherry (to globally label axon tracts and neuroblasts) at 72h ALH were fed media containing 16 μg/ml bromophenol blue and 130 μM EdU for four hours. Larvae with EdU incorporated were dissected either immediately (Fig. 5M-N) or chased to wandering third instar larvae stage (Fig. 5O-P) and fixed in 3.7% formaldehyde in PBS (pH = 7.4) and permeabilized with 0.3% PBT. Samples were incubated in an optimized EdU reaction (provided by the manufacturer) containing: 425 μl Click-iT Reaction Buffer, 20 μl CuSO4, 1.2 μl AlexaFluor 647 Azide, 1 μl anti-GFP (Fig. 5O-P; polyclonal antibody conjugated to AlexaFluor 488; Molecular Probes, Cat No #A-21311), 50 μl 10x Click-iT Buffer Additive for 90 min and whole-mounted in Vectashield.
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3

Assessing OSCC Cell Proliferation

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After 48 h transfection, CAL27 and SCC25 cells (2 × 104/well) were seeded in 24-well plates. The 5-ethynyl-2′-deoxyuridine (EdU) assay (Life Technologies Corporation, USA) was used to evaluate the proliferation ability of OSCC cells as previously reported [16 (link)]. Briefly, CAL27 and SCC25 cells were incubated with 100 μL EdU reagent for 2 h at 37 °C, and stained with DAPI and visualized by a fluorescence microscope (Olympus, Tokyo, Japan).
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Proliferation Assays in Oral Squamous Cell Carcinoma

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After 48h transfection, CAL27 and SCC25 cells (2x10 4 /well) were seeded in 24-well plates. The 5-ethynyl-2′-deoxyuridine (EdU) assay (Life Technologies Corporation, USA) was used to evaluate the proliferation ability of OSCC cells as previously reported [16] . Brie y, CAL27 and SCC25 cells were incubated with 100μL EdU reagent for 2h at 37°C, and stained with DAPI and visualized by a uorescence microscope (Olympus, Tokyo, Japan).
Cell counting Kit-8 (CCK-8) assay CAL27 and SCC25 cells were cultured in 96-well plates at 8000cells/well after transfection. Following the 4 consecutive days culture, each well was replaced by the fresh medium containing 10% CCK-8 solution (Yeasen, Shanghai, China). After a 2h incubation at 37°C, the absorbance of 450nm was measured using a microplate reader (Bio-Rad, Hercules, CA, USA)
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