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2 protocols using fluorescein isothiocyanate conjugated anti rabbit antibody

1

Caco-2 Cell Culture and Western Blot Analysis

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Caco-2 cells were purchased from European Collection of Cell Cultures (ECACC, Public Health England Porton Down, Salisbury, UK). Cell medium, chemicals and reagents used for cell culture, and TcdA were purchased from Sigma–Aldrich (St. Louis, MO, USA), unless otherwise stated. Instruments, reagents, and materials used for western blot analysis were obtained from Bio-Rad Laboratories (Milan, Italy). Rabbit anti-zona occludens-1 (ZO-1), anti-occludin and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) antibodies were procured from Cell Signaling Technology (Danvers, MA, USA). Rabbit anti-toll-like receptor 4 (TLR4), mouse anti-ZO-1, anti-Bcl-2-associated X protein (Bax), mouse anti-MyD88, rabbit anti-transforming growth factor-β-activated kinase-1 (pTAK1), and mouse anti-TAK1 antibody were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA) and horseradish peroxidase (HRP) was obtained from Dako (Milan, Italy). Fluorescein isothiocyanate-conjugated anti-rabbit antibody and Texas red conjugated anti-mouse antibody were purchased from Abcam (Cambridge, UK), and custom oligonucleotides for electrophoretic mobility shift assay (EMSA) analysis were synthesized by TIB Molbiol (Berlin, Germany).
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2

Evaluating Rifaximin and Ketoconazole Effects on Caco-2 Cell Proliferation

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Caco-2 cells were plated onto glass slide chambers coated with poly-d-lysine (3x10 4 cells/well) and incubated for 24 h in the presence of rifaximin with or without ketoconazole.
After the treatment, cells were washed with PBS-Triton 0.1% (T-PBS), fixed in 4% paraformaldehyde and then incubated in 10% BSA/0.1% T-PBS solution for 90 min and for 1 h with a 10% BSA/0.1% T-PBS solution of anti-proliferating cell nuclear antigen (PCNA) antibody 1:100 (Abcam) for immunostaining. Finally, the cells were incubated for 1 h in the dark with fluorescein isothiocyanate conjugated anti-rabbit antibody 1:100 (Abcam). Nuclei were stained using hoechst stain (1:5,000) (Sigma-Aldrich) and images were captured using a camera (Nikon digital sight dS-U1) connected to a microscope (Nikon eclipse 80i; Nikon Instruments Europe). The analysis of RGB intensity was performed using NIH software and quantification of PCNA + proliferating cells was expressed as % of PCNA + expressing cells per selected area (1 mm 2 ).
Statistical analysis. Results were expressed as mean ± SEM of n= 4 experiments in triplicate. Statistical analysis was performed using parametric one way analysis of variance (ANOVA) and multiple comparisons were performed using Bonferroni's post hoc test. P-values <0.05 were considered to indicate a statistically significant result.
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