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4 protocols using trichloroacetic acid

1

Comprehensive Biochemical Assay Protocol

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TMZ, adrenaline bitartrate, 5,5-dithio-bis-(2-nitrobenzoic acid) (DTNB), and Vanillin were purchased from Sigma-Aldrich, St. Louis, MO, USA. Trypsin and Triton-X 100 were purchased from Himedia lab Pvt. Ltd. (Mumbai, India). Carboxymethyl cellulose (CMC) was purchased from Rankem, India. Sodium Chloride and trichloroacetic acid were purchased from SD Fine Chemicals, India. Disodium EDTA, hydrogen peroxide, disodium hydrogen phosphate dehydrate sodium bicarbonate, potassium dihydrogen phosphate, and disodium hydrogen phosphate were purchased from Himedia Laboratories Ltd, India. Fetal bovine serum and Dulbecco’s modified Eagle’s medium were purchased from Gibco, USA.
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Quantifying Candida Aspartyl Protease Activity

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Candida isolates’ aspartyl protease activities were evaluated as previously reported [31 (link)]. The degradation of bovine serum albumin (BSA) was measured. Ten microliters of test isolate containing 106 CFU/mL were inoculated onto 1% w/v BSA (Levochem, New York, NY, USA) agar plate. The incubation conditions were maintained at 37 °C for five days. Further protease activity was suppressed by adding 20% w/v trichloroacetic acid after incubation (S D Fine-Chem Limited, Mumbai, India), and the plate was stained with 1.25% w/v amido black (Hi-Media, Mumbai, India). Proteolytic activity was demonstrated by a zone of proteolysis encircling the colony that could not be stained with amido black. The protease index (Prz) was calculated by dividing the colony diameter by the diameter of the unstained zone. A Prz value of one indicates no protease activity, while a Prz value lower than one indicates that the tested isolate expresses aspartic protease. The higher the aspartic protease activity, the lower the Prz value [32 ]. The assay was repeated three times for each isolate. As a positive control, C. albicans ATCC 10231 was used.
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Quantifying Aspartyl Protease Activity in C. albicans

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C. albicans isolates’ aspartyl protease activities were evaluated by a previously described method [27 (link), 29 (link)]. Aliquots (5 μL) of standardized fungal inoculum of the previously mentioned antifungal-treated and control suspensions were spot inoculated aseptically onto 1% w/v bovine serum albumin (Levochem, N.Y., U.S.A.) agar plates, which were left to dry out and then incubated at 37 °C for 5 days. Further proteolytic activity was stopped using 20% w/v trichloroacetic acid (S D Fine-Chem Limited, Mumbai, India) and plates were stained with 1.25% w/v amidoblack (Hi- Media, Mumbai, India) and checked for the presence of proteolysis zone around the colonies, which was not stained with amidoblack. The protease index (Prz) was measured in terms of the ratio between the diameters of unstained zone and the colony [23 (link)]. Each assay was conducted in quadruplicate on two individual experiments. C. albicans ATCC 10231 was the positive control strain for the experiment. Results for this test were expressed as the percentage reduction in aspartyl protease production applying the following formula: Aspartyl protease reduction%=1Przassay/Przcontrol×100
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Enzymatic Assays for Oxidative Stress

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Gallic acid, 2,3,5-Triphenyl tetrazolium chloride (TTC), 5,5′-dithiobis-(2- nitrobenzoic acid) (DTNB), NADH, Phenazine methosulphate, were purchased from Sisco research laboratories Pvt. ltd. Sodium lauryl sulphate, Glacial acetic acid, dipotassium hydrogen phosphate, Tris buffer were purchased from Fisher scientific. Trichloro acetic acid, Sodium pyro phosphate, H2O2 were purchased from S D Fine-Chem Limited. N-butanol, Pottassium dihydrogen phosphate were purchased from Merck Life Science Pvt Ltd. All other chemicals were of the highest purity commercially available.
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