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R environment version 3

R environment version 3.5 is a software environment for statistical computing and graphics. It provides a wide range of statistical and graphical techniques, and is highly extensible. R environment version 3.5 is the latest stable release of the R software, providing bug fixes and minor improvements over previous versions.

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Lab products found in correlation

3 protocols using r environment version 3

1

Bacterial Biofilm Growth and Immune Responses

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Differences in the growth of bacterial biofilm in CSE and ECVE were analysed using the Wilcoxon signed-rank test with Bonferroni’s adjustment for multiple comparisons [GraphPad Prism (version 6, GraphPad Software, San Diego California USA]. A one-way ANOVA test with Tukeys test for multiple comparisons was used to compare changes in G.mellonella following bacterial infection +/− CSE/ECVE exposure [R Environment version 3.3.1 (http://www.r-project.org)]. Changes in IL-8 and TNF-α +/− CSE/ECVE were analyzed by the Mann Whitney test, and the effect of pathway inhibitors, by pairwise comparison using Kruskal-Wallace test and Dunn’s test [R Environment version 3.3.1 (http://www.r-project.org)].
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2

Adverse Events in Heart Disease Patients

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The median follow-up time was 8.4 years (25th-75th percentiles: 5.9-12.2 years). Information about the occurrence of adverse events at follow-up was retrieved from the hospital medical records, the Dutch Personal Records Database, or telephone contact with the patient or their general practitioners. We collected information regarding 4 different adverse events: death caused by cardiovascular disease; heart transplantation or left ventricular assist device (LVAD) implantation; heart failure that required a nonelective hospitalization, despite optimal heart failure therapy, according to the ESC, American College of Cardiology (ACC), and American Heart Association (AHA) guidelines; and life-threatening arrhythmias (LTAs), defined as nonfatal ventricular fibrillation (with or without ICD-shock) or sustained ventricular tachycardia with appropriate ICD shock. The combined endpoint was defined as the occurrence of at least 1 of these adverse events. Patients who died of noncardiac causes were censored at the moment of death (n = 2); those patients did not reach the combined endpoint.
Kaplan-Meier survival curves were estimated and differences among groups were assessed by the log-rank test, using time of diagnosis as time zero. Calculations were done using R environment version 3.5 (R Foundation).
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3

Survival Analysis of Genetic Variants

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Kaplan-Meier survival curves were estimated and differences between groups were assessed by the log-rank test, using time of DCM diagnosis as time zero. Cox proportional hazards regression analysis was performed to assess the association between the number and presence of VUSs with event-free survival. Calculations were done using R environment version 3.5 (R Foundation, Vienna, Austria).
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