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21 protocols using acid phosphatase assay kit

1

Quantifying Osteoclast Differentiation and Activity

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To evaluate the presence of Tartrate-resistant acid phosphatase (TRAP)-positive multinuclear cells and TRAP activity, the TRAP activity was confirmed using Sigma-Aldrich (Saint Louis, MO, USA) Acid Phosphatase Assay kit. RAW 264.7 cells were cultured in a 24-well plate at 5 × 103 cells/well for 24 h and then treated with RANKL, LGS, and ODE for 7 days. Then, according to the manufacturer’s instructions, pick and dispense the supernatant from 96 wells, then dispense the substrate and let it react for 20 min in the incubator. Then add the stop solution, stop the reaction, and measure the absorbance at 405 nm. Quantification of TRAP activity was calculated according to the protocol of the Acid Phosphatase Assay kit (Sigma-Aldrich, Saint Louis, MO, USA). For TRAP staining, cell staining was performed using an acidic phosphatase solution containing sodium tartrate according to the manufacturer’s protocol after fixation with 4% formaldehyde for 15 min and after cell fixation. Stained cells were examined under a microscope and digital pictures were taken.
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2

Quantification of Lysosomal Enzymes

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Tissues were harvested and lysed in immunoprecipitation assay buffer. Cellular debris was pelleted by centrifugation at 13 000 g for 30 minutes at 4°C. The total lysate protein were used to detect lysosomal enzyme activities using the Acid Phosphatase Assay Kit (Catalog Number CS0740; Sigma‐Aldrich), the β‐N‐Acetylglucosaminidase Assay Kit (Catalog Number CS0780; Sigma‐Aldrich) and Cathepsin D Activity Assay Kit (ab65302; Abcam).
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3

Femur Immunohistochemistry and Histology

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Mouse femoral bones were fixed in 4% PFA for 2 h at 4 °C, decalcified with 0.5 M EDTA (Sigma-Aldrich) for 4 weeks, and decalcified bones were immersed in a 20% sucrose and 2% polyvinylpyrrolidone (Sigma-Aldrich) solution for 1 week.
For immunostaining, the bones were embedded and frozen in OCT, and 6-μm-thick sections were cut along the longitudinal axis of the femur. Bone sections were blocked in 5% bovine serum albumin and 0.3% Triton X-100 for 1 h, and incubated with antibodies (1:300 for primary antibodies, 1:1000 for secondary antibodies). Nuclei were counterstained with DAPI. The antibodies were as follows: anti-CD3 (abcam, Cambridge, MA), anti-RANKL (abcam), Alexa Fluor 555 Donkey Anti-Rabbit IgG H&L, and Alexa Fluor 488 Goat Anti-Rat IgG H&L (abcam).
To detect osteoblasts and osteoclasts, the tissues were dehydrated in 75% ethanol overnight, then sequentially in 85% ethanol, 95% ethanol, and 100% ethanol for 1 h each. The femoral bones were treated with xylene twice for 15 min, then embedded in paraffin, and 5-μm-thick sections were taken. Morphological analysis of osteoblasts was performed by standard hematoxylin and eosin (H&E) staining. TRAP was stained using an acid phosphatase assay kit (Sigma-Aldrich), and TRAP-positive osteoclasts were examined at 20× magnification.
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4

Quantifying Acid Phosphatase Activity in HEK293T Cells

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HEK293T transfected with either GFP or GFP-TFEB were grown to sub-confluency in complete medium in 6-well plates. When cells were attached, FAC (50 μM) was added where indicated in medium containing 1% BSA. After 36 h, cells were washed three times in Hanks balanced salt solution and then incubated in 1 ml of medium containing 1% BSA for 12 h at 37 °C in the presence or absence of FAC (50 μM), NAADP-AM (100 nM) or Ned19 (1 μM) as indicated. Secreted and intracellular acid phosphatase activities were measured using the Acid Phosphatase Assay Kit (Sigma Aldrich, CS0740) according to manufacturer’s instructions and as previously described [17 (link)], and protein concentrations were determined using the BCA assay (Pierce Biotechnology).
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5

Acid Phosphatase and LDH Secretion in ARPE-19 Cells

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ARPE-19 cells were grown to subconfluency in complete medium in 6-wells plate. Cells were washed three times in Hank’s balances salt solution (Invitrogen) and then incubated in 1.1ml of medium without serum for 8 h at 37°C. For acid phosphatase the secreted activity was assayed in 0.45 ml of media by using the acid phosphatase assay kit from Sigma-Aldrich (CS0740) and following manufacturer’s instructions. Intracellular acid phosphatase activity was determined by lysing the cells in 10 mM phosphate buffer, pH 6.0, 0.15 M NaC1, 0.5%Triton X-100 followed by centrifugation at 100,000xg for 15min at 4°C. Fifteen microliters of triton cell extracts were used to measure the activity remaining in the cells. The secreted activity was expressed as percentage of the total (secreted plus intracellular) activity. For lactate dehydrogenase, the release activity was determined by using the LDH kit from Sigma-Aldrich (Tox7-1kt) following manufacturer’s recommendations. The released activity was expressed as percentage of the total (released plus intracellular) activity.
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6

Isolation and Characterization of Lysosomes

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For the isolation of lysosomes, approx. 50 million cells were collected after 2 h of exposure to CuO NPs at the indicated concentrations. Cells were then processed using the lysosome enrichment kit (Thermo Fisher Scientific). Briefly, cell extracts were prepared in lysosome enrichment reagent A by homogenizing the cell pellet using a pre-chilled Dounce tissue grinder on ice. Lysed cells were then transferred into a microcentrifuge tube and lysosome enrichment reagent B was added. Next, supernatants were collected in fresh tubes by centrifugation (500×g for 10 min at 4 °C) and proceeded with the density gradient ultracentrifugation at 145,000×g for 2 h at 4 °C. The upper lysosome fraction was collected and mixed with PBS. Next, the diluted lysosome fraction was centrifuged at 18,000×g for 30 min at 4 °C and the pelleted lysosomes were stored at − 20 °C until further use. Lysosomal integrity in isolated samples was determined by measuring acid phosphatase activity using the acid phosphatase assay kit (Sigma) and the results confirmed that the isolated lysosomes remained intact (data not shown).
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7

Enzymatic Activity Quantification Protocols

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Acid phosphatase enzyme activity was determined using an Acid Phosphatase Assay kit (Sigma); a luminescence-based assay that uses 4-nitrophenyl phosphate as the substrate (Chen et al., 2010 (link)). Enzyme activities of cathepsin D and cathepsin B were determined using two separate assay kits (BioVision); fluorescence-based assays that use preferred MCA-labeled substrates for cathepsin-D and cathepsin B (Chen et al., 2010 (link)). Enzyme activities were expressed as relative opitcal density or fluorescence units (RFU) per 50 μg of total protein. Specific activities of each enzyme were indicated by the ratio of enzyme activity to protein levels as determined by immunoblotting
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8

Rab Proteins and Lysosome Identification

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Western blotting was performed as per earlier studies [30 (link)] to monitor expression of Rab 5, EEA1, Rab7, LAMP1, and KSHV TRI-1. Acid phosphatase activity for lysosome identification was analyzed in 50 µl sample from each fraction by using Acid Phosphatase Assay Kit (Sigma) according to the manufacturer’s instructions.
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9

Isolation and Characterization of Lysosomes from Macrophages

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Lysosome organelles from oxLDL‐treated wild and CD38−/− macrophages were isolated by gradient centrifugation using lysosome enrichment kit as we did previously 16, 37, 38. In brief, macrophages were broken with a Dounce homogenizer, and the cell homogenates were overlaid on the top of multilayer OptiPrep gradients (in %) 17, 20, 23, 27, 30. After ultracentrifuge at 4°C, 145,000 × g, 2 hrs, the lysosome‐containing layer was collected and subjected to PBS wash to rid of Optiprep. The purity of lysosome was confirmed by lysosome acid phosphatase activity assay (Acid phosphatase assay kit; Sigma‐Aldrich), as well as NADPH‐cytochrome c reductase and alkaline phosphodiesterase activity measurement to ensure free plasma membrane and endoplasmic reticulum contamination. The lysosomal cholesteryl ester and free cholesterol were measured by cholesterol quantitation kit with the procedures described in user's manual.
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10

Lysosomal Enzyme Activity Assays

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Cells (1 × 105) were seeded in 60-mm plates and were pre-treated with 1α,25-dihydroxyvitamin D3 or carbamazepine at the indicated concentrations for 24 h before the exposure to TcdB (10 nM). Cellular debris was pelleted by centrifugation at 13,000 × g for 30 min at 4°C. The total lysate protein were used to detect lysosomal enzyme activities using the Acid Phosphatase Assay Kit (Sigma‐Aldrich, CS0740) and the β‐N‐Acetylglucosaminidase Assay Kit (Sigma‐Aldrich, CS0780).
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