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23 protocols using foxa2

1

Immunofluorescence Staining of Neural Progenitor Cells

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Cells were rinsed in PBS and fixed in 4%PFA for 15 mins. Cells were then permeabilised via three washes in PBS containing 0.3% Triton-X-100 (PBST) and then blocked in PBST containing 1% BSA and 3% normal donkey serum. Primary antibodies were added in blocking solution for 2 hours at ambient temperature or overnight at 4 °C. The cells were washed in PBST three times before being incubated for 1 hour in the dark in Alexa-Fluor secondary antibodies, 1:200 (Invitrogen). Three PBST washes were then performed that included one with DAPI, 1:1000 (Molecular Probes). The primary antibodies used in this study were: FolR1(sheep, R&D), TH (rabbit, PelFreez), Pitx3 (rabbit, gift of M. Smidt, University of Amsterdam), Foxa2 (goat, Santa Cruz), Foxa2 (Rabbit, Abcam), Lmx1a (rabbit, gift of M. German, UCSF), Nestin (mouse, BD Pharmagen), GFAP (rabbit, Dako), GABA(rabbit, Sigma), 5HT(mouse, Abcam), Isl1(mouse, DSHB), Lim1/2(mouse, DSHB), Pax6(mouse, DSHB), Nkx6.1(mouse, DSHB), Dmrt5(rabbit, custom made). Images were taken on a Leica TCS SP5 confocal microscope. Quantification of markers was carried out manually by examining randomly selected fields from at least 3 independent experiments and presented as means ± sem.
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2

Immunofluorescence Staining of Hepatic Markers

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Cells cultured on 6-well plates (1000 μL/well)/12-well plates (400 μL/well) were divided into different groups. After washing with phosphate-buffered saline + 0.05% Tween (PBST) three times (5 min each time), the cells were fixed with precooled methyl alcohol for 20 min at − 20 °C. Triton X-100 (0.5%) was added to the cell slide and incubated for 20 min for transparency. After that, the cells were washed with PBST and blocked with bovine serum albumin (BSA) (Abcone) for 30 min. Finally, the cells were incubated overnight with SOX17 (Rabbit, Proteintech, 1:100)/FOXA2 (Mouse, Abcam, 1:200), HNF4A (Rabbit, Abcam, 1:200)/AFP (Mouse, ABclonal, 1:100), CK19 (Rabbit, Proteintech, 1:100)/ALB (Mouse, Proteintech, 1:100), or β-catenin antibody (Rabbit, Proteintech, 1:100) at 4 °C. After washing 3 times, the cells were incubated with goat anti-mouse/rabbit IgG-FITC or goat anti-mouse/rabbit IgG-RBITC fluorescent secondary antibodies (Earthox, 1:500) for 60 min. Then, the cells were mixed with DAPI reagent for 10 min. Cell slides were observed under an optical microscope (MF52-N, Mshot) or with Axio Imager M2 software (Nikon) (×100, ×200 magnification).
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3

Immunohistochemical and Immunofluorescence Analysis of Uterine Tissue

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The tissue specimens were fixed overnight in 10% neutral buffered formalin and then dehydrated in increasing concentrations of ethyl alcohol, followed by clearing of alcohol by xylene. Uterine slices were deparaffinized and incubated in citrate buffer for antigen retrieval by hyperbaric heating and then incubated overnight at 4 °C with the primary antibodies including Menin (Bethyl, 1:1000), COX2 (Santa Cruz, 1:200), Dtprp (homemade, 1:200), Ki67 (Servicebio,1:200), PL1 (Santa Cruz, 1:200), 3β-HSD (Santa Cruz, 1:200), p450scc (Santa Cruz, 1:200), PR (Cell Signaling Technology, 1:200), HAND2 (Santa Cruz, 1:200), p27 (Abcam,1:100), pH3 (Cell Signaling Technology, 1:200), ERK1/2 (Cell Signaling Technology, 1:200) and p-ERK1/2 (Cell Signaling Technology, 1:200). A Histostain-SP Kit (Zhongshan Golden Bridge Biotechnology) was applied to visualize the antigen. Immunofluorescence staining for OCT4 (Cell Signaling Technology, 1:200), β-Catenin (Abcam, 1:200), H3K27me3 (Cell Signaling Technology, 1:200), BrdU (Abcam, 1:500), PCNA (Santa Cruz, 1:200) and FOXA2 (Abcam, 1:500) was performed in paraffin-fixed sections and secondary antibody CyTM3 AffiniPure Goat Anti-Rabbit IgG(H + L) (Jackson ImmunoResearch,1:200) were used. The images were captured by Leica DM2500 light microscope. Antibodies with detailed information are listed in Supplementary Table 1.
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4

Immunohistochemical Profiling of Liver Tissue

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Tissue was fixed in 10% buffered formalin for 8 h and embedded in paraffin for sectioning. Sections were dewaxed in xylene and rehydrated in decreasing concentrations of ethanol. Tissue underwent heat-induced antigen retrieval for 10 min in Tris-EDTA (pH = 9). For single chromogenic immunodetection, sections were blocked for endogenous peroxidase and avidin/biotin binding sites (Vector Laboratories, Burlingame, CA, USA). Primary antibodies were incubated overnight at 4 °C at the following concentrations: GFP (Abcam, 1:400), HNF4α (Abcam, 1:250), alpha-smooth muscle actin (ɑSMA; Sigma-Aldrich, 1:1000), Foxa2 (Abcam, Cambridge, UK, ab108422, 1:500), albumin (Abcam, 1:100), and epithelial cell adhesion molecule (EpCAM; Abcam, 1:100), and signal was visualized using avidin-biotin complex methods. For immunofluorescent detection, sections were blocked for an hour in protein block (Vector Laboratories) and primary antibodies were incubated overnight and visualized utilizing Alexa Fluor secondary antibodies (Invitrogen, 1:200) and DAPI (1:1000).
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5

Histological and Immunobiological Analysis of Uterus

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After the surgery, tissue samples were collected for gross observation, histological and immunobiological evaluation, and immunofluorescence staining. Segments of uterus were fixed in 10 % neutral formaldehyde for 24 h, embedded in paraffin. Hematoxylin/eosin and Masson's trichrome stains were performed according to standard protocols for the observation of morphological and histological changes. The expression of α-SMA (Abcam, Cambridge, UK, 1: 1000), EpCAM (Abcam, Cambridge, UK, 1: 200), FoxA2 (Abcam, Cambridge, UK, 1: 200), and CD31 (Abcam, Cambridge, UK, 1: 1000) proteins was detected by immunohistochemistry. Images of four randomly selected fields on each slide were analyzed using Image J software 1.8.0. Histological evaluation was performed by an experienced pathologist blinded to the grouping.
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6

Characterization of Pluripotent Stem Cells

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For alkaline phosphatase staining, iPSCs were fixed in a citrate–acetone–formaldehyde solution and then stained with alkaline phosphatase staining solution (Naphthol/fast red violet, Sigma). Cell images were captured using an Olympus microscope (IX51, Olympus, Tokyo, Japan).
For immunofluorescence staining, cells were fixed in 4% formaldehyde and then permeabilized with phosphate-buffered saline containing 0.1% Triton X-100 (Sigma). After blocking with 3% bovine serum albumin (Sigma), cells were incubated with the following primary antibodies for human embryonic stem cells (hES) markers: OCT3/4 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), TRA-1-60 (Chemicon, Santa Cruz, CA, USA), TRA-1-81 (Chemicon), NANOG (Santa Cruz Biotechnology), SSEA3 (R&D Systems, Minneapolis, MN, USA), and SSEA4 (R&D Systems). Primary antibodies for three germ layer differentiation: SOX17 (R&D Systems), α-smooth muscle actin (Sigma-Aldrich, Carlsbad, CA, USA, A5228), NESTIN (Chemicon), FOXA2 (Abcam, Cambridge, MA, USA), DESMIN (Chemicon) and TUJ1 (Covance, Munich, Germany). DAPI (4′,6-diamidino-2-phenylindole, KPL) was used for nuclear counterstaining. Chamber slides were observed with an Axiovert 200M microscope (Carl Zeiss, Gottingen, Germany) or an Olympus microscope (Olympus).
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7

Immunolabeling of Pluripotency and Lineage Markers

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For immunolabeling, cells were fixed in prechilled PBS with 4% paraformaldehyde for 15 min and permeabilized in PBS with 0.25% Triton X-100 for 10 min at room temperature. Nonspecific binding sites were blocked for 1 h by PBS containing 1% bovine serum albumin and 0.1% Tween 20. The fixed cells were incubated overnight at 4 °C with antibodies specific for OCT4 (5 μg/ml, rabbit polyclonal, Abcam, Nanchang, China), SSEA-4 (15 μg/ml, mouse monoclonal, Abcam), Nanog (1:200, rabbit monoclonal, Abcam), E-cadherin (1:100, mouse monoclonal, Abcam), Sox17 (1:50, mouse monoclonal, Abcam), FOXA2 (1:350, rabbit monoclonal, Abcam), AFP (5 μg/ml, mouse monoclonal, Abcam), ALB (1:500, rabbit monoclonal, Abcam), and AAT (1:50, rabbit monoclonal, Abcam). Specific labeling was visualized using secondary donkey anti-mouse or anti-rabbit antibodies conjugated to either Alexa Fluor 488 or Alexa Fluor 568 (Jackson, Nanchang, China). Nuclei were visualized by staining with DAPI (Thermo Fisher).
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8

Immunohistochemistry of Embryonic Spinal Cord

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Pregnant mice were euthanized at E10.5. Embryos were removed from the amniotic cavity, fixed in 4% PFA for 4 h at 4°C, cryoprotected in 30% sucrose solution, and embedded in Optimal Cutting Temperature compound. Transverse cryosections through the lumbar region were re-fixed with pre-chilled 4% PFA for 10 min at RT, permeabilized with 0.1% Triton X-100 for 10 min, blocked with 5% normal goat serum (Sigma) and incubated with antibodies against FoxA2 (Abcam; 1∶250 dilution), HB9 (Developmental Studies Hybridoma Bank, University of IA; 1∶30 dilution), Nkx2.2 (Developmental Studies Hybridoma Bank, University of IA; 1∶10), acetylated α-tubulin (1∶1000, Sigma), or Arl13b (1∶500, Protein Tech). Secondary antibodies were labeled with Alexa fluor 488 and Alexa fluor 568 (Invitrogen, 1∶500), and fluorescence was visualized using a confocal microscope (LSM-510, Carl Zeiss Inc.).
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9

Multiparametric Immunohistochemical Profiling

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The dried tissue sections were permeabilized and blocked with DPBS (Welgene) containing 0.03% Triton X-100 (Sigma) and 5% FBS (Seradigm) for 1 hr at room temperature. The permeabilized tissue sections were then incubated with the appropriate primary antibody for 16 hr at 4°C, and then incubated with the appropriate secondary antibody after being washed three times with DPBS (Welgene). Counterstaining was performed with TOPRO-3 (Life Technology). Primary antibodies used for immunohistochemistry are as follows: MAP2 (Sigma, 1 : 500), TH (Abcam, 1 : 500), TH (R&D system, 1 : 500), TBR1 (Abcam, 1 : 500), TUJ1 (Biolegend, 1 : 1,000), SOX2 (R&D system, 1 : 500), FOXA2 (Abcam, 1 : 500), LRTM1 (Cusabio, 1 : 500), GIRK2 (Abcam, 1 : 500), FOXG1 (Abcam, 1 : 500), GABA (Sigma, 1 : 500), GLUT (Cusabio, 1 : 500), GFAP (CiteAb, 1 : 200), S100β (Abcam, 1 : 200), MBP (Abcam, 1 : 200), AQP4 (Abcam, 1 : 500), O4 (R&D system, 1 : 500), OLIG2 (Merck Millipore, 1 : 500), PSD-95 (Thermo Fisher, 1 : 300), SYP (Cusabio, 1 : 500), Dopamine (ImmuSmol SAS, 1 : 500), and caspase 3 (Cell Signaling, 1 : 500).
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10

Multiparametric Immunohistochemical Profiling

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The dried tissue sections were permeabilized and blocked with DPBS (Welgene) containing 0.03% Triton X-100 (Sigma) and 5% FBS (Seradigm) for 1 hr at room temperature. The permeabilized tissue sections were then incubated with the appropriate primary antibody for 16 hr at 4°C, and then incubated with the appropriate secondary antibody after being washed three times with DPBS (Welgene). Counterstaining was performed with TOPRO-3 (Life Technology). Primary antibodies used for immunohistochemistry are as follows: MAP2 (Sigma, 1 : 500), TH (Abcam, 1 : 500), TH (R&D system, 1 : 500), TBR1 (Abcam, 1 : 500), TUJ1 (Biolegend, 1 : 1,000), SOX2 (R&D system, 1 : 500), FOXA2 (Abcam, 1 : 500), LRTM1 (Cusabio, 1 : 500), GIRK2 (Abcam, 1 : 500), FOXG1 (Abcam, 1 : 500), GABA (Sigma, 1 : 500), GLUT (Cusabio, 1 : 500), GFAP (CiteAb, 1 : 200), S100β (Abcam, 1 : 200), MBP (Abcam, 1 : 200), AQP4 (Abcam, 1 : 500), O4 (R&D system, 1 : 500), OLIG2 (Merck Millipore, 1 : 500), PSD-95 (Thermo Fisher, 1 : 300), SYP (Cusabio, 1 : 500), Dopamine (ImmuSmol SAS, 1 : 500), and caspase 3 (Cell Signaling, 1 : 500).
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