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Axiovision 4.7 microscopy software

Manufactured by Zeiss
Sourced in Germany, United States

AxioVision 4.7 is a microscopy software package developed by Zeiss. It provides a user interface and tools for the acquisition, processing, and analysis of microscopic images.

Automatically generated - may contain errors

9 protocols using axiovision 4.7 microscopy software

1

Lentiviral Transduction and Cell Viability Assay

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HCT116 cells and SW1116 cells were exponentially cultured and infected with constructed lentiviruses at a MOI of 30 for 96 h. Transfected cells were washed and re-seeded in 96-well plates at a density of 2,500 per well for HCT116 cells and 2,000 per well for SW1116 cells. Each well was treated with MTT solution dissolved in 10% SDS, 5% isopropanol and 0.01 M HCl for 10 min at 37°C, and the formazan crystals were solubilized with 100 ml of 10% SDS in 0.01 M HCl for 24 h. Cell viability was determined by measuring absorbance at a wavelength of 595 nm under a microplate reader. Cell count and optical density readings using AxioVision 4.7 microscopy software (Carl Zeiss AG, Oberkochen, Germany) were performed daily for 5 days.
Colony formation assays were performed by inoculating HCT116 and SW1116 cells into 6-well plates at the end of 96 h of lentivirus infection. In total, 500 cells per well of transfected HCT116 cells and 300 cells per well of SW1116 cells were cultured for 8 days. Colony cells were fixed with methanol and stained with 0.1% crystal violet. The number of colonies containing >50 cells was manually counted by microscopy (LSM710; Carl Zeiss AG).
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2

Immunohistochemical Analysis of Tongue Cancer

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Immunohistochemical analysis was performed to investigate the expression of HMGA2, Snail, E-cadherin and Vimentin in different grades of human tongue cancer. Briefly, immunohistochemistry (IHC) was performed on the paraffin-embedded human tongue cancer tissue sections. Antigen retrieval was performed in a pressure cooker in citrate solution, pH 6.0, for 15 min, followed by treatment with 3 % hydrogen peroxide for 5 min. Specimens were incubated with antibodies as followed: goat monoclonal antibodies against HMGA2 (1:100, CST), E-cadherin, vimentin, snail (1:100, Santa Cruz, Santa Cruz, CA, USA). For the negative controls, isotype-matched antibodies were applied. The tissue sections were observed under a Zeiss AX10-Imager A1 microscope (Carl Zeiss, Thornwood, NY) and all images were captured using AxioVision 4.7 microscopy software (Carl Zeiss, Thornwood, NY).
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3

Microscopic Analysis of Biological Objects

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The cytological preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS, using an Axioscop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations were stained with fluorescent dyes and examined under an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss).
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4

Mtb Infection of Alveolar Macrophages

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The histological sections, cytological and other preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS (Novosibirsk, Russian Federation), using an Axioskop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations stained with fluorescent dyes were examined under an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss). The human cells and Mtb in host cells were counted separately on each preparation for each patient in each test. More than 1000 alveolar macrophages were analyzed at each cytological preparation for each patient. The size of Mtb was analyzed using the ImageJ 1.53t software. For the histological preparations, three un-serial tissue sections from each individual sample were analyzed for each patient.
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5

Mtb Infection of Alveolar Macrophages

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The histological sections, cytological and other preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS (Novosibirsk, Russian Federation), using an Axioskop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations stained with fluorescent dyes were examined under an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss). The human cells and Mtb in host cells were counted separately on each preparation for each patient in each test. More than 1000 alveolar macrophages were analyzed at each cytological preparation for each patient. The size of Mtb was analyzed using the ImageJ 1.53t software. For the histological preparations, three un-serial tissue sections from each individual sample were analyzed for each patient.
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6

Immunohistochemistry of Transplanted Tumor

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Immunohistochemistry was performed on paraffin-embedded mouse transplanted tumor tissue sections. The tissue sections were incubated with SMYD3, E-cad, vimentin and Twist1 primary antibody at 4 °C overnight. The secondary antibody was incubated for 30 minutes at room temperature. The tissue sections were observed under a Zeiss AX10-Imager A1 microscope (Carl Zeiss, Thornwood, NY, USA) and processed with AxioVision 4.7 microscopy software (Carl Zeiss, Thornwood, NY, USA).
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7

Microscopic Analysis of Biological Objects

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The cytological preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS, using an Axioskop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations were stained with fluorescent dyes and examined under an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss). Granuloma cells were counted separately on each coverslip for each mouse in each test. In each experiment with bone marrow and peritoneal cell cultures, more than 1000 cells in 30 fields of view were analyzed at each time point.
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8

Immunohistochemical Analysis of RFC3 in TNBC

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Immunohistochemical analysis was performed to investigate the expression of RFC3 in TNBC. Briefly, immunohistochemistry was performed on the paraffin-embedded human TNBC tissue sections using mouse monoclonal anti-RFC3 (1:50, ab154899; Abcam, Cambridge, MA). For the negative controls, isotype-matched antibodies were applied. The tissue sections were observed under a Zeiss AX10-Imager A1 microscope e (Carl Zeiss, Thornwood, NY) and all images were captured using AxioVision 4.7 microscopy software (Carl Zeiss, Thornwood, NY). Immunoreactivity for RFC3 protein was scored by semi-quantitative method by evaluating the number of positive cells over the total number of cells, which was reported by Cai et al. [22] (link). Scores were assigned by using 5% increments (0%, 5%, 10%...100%). RFC3 expression was assessed by three independent pathologists, if two or all of them agreed with the results they scored, the value was selected. If the results were completely different, then all of them would work collaboratively to confirm the score.
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9

Microscopic Examination of Biological Samples

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The cytological and histological preparations were examined at the Shared Center for Microscopic Analysis of Biological Objects of the Institute of Cytology and Genetics, SB RAS, using an Axioscop 2 plus microscope (Zeiss) and objectives with various magnifications (Zeiss), and photographed using an AxioCam HRc camera (Zeiss); the images were analyzed using the AxioVision 4.7 microscopy software (Zeiss). Cell preparations stained with fluorescent dyes were examined under an LSM 510 or an LSM 780 laser scanning confocal microscope (Zeiss) using the LSM Image Browser and ZEN 2010 software (Zeiss). All cells were counted separately on each cover slip for each patient in each test.
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