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4 protocols using cd27 bv711

1

Immunophenotyping of ex vivo B cells

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Freshly isolated or ex vivo cultured human cells were washed in PBS with 5% bovine serum (FACS buffer) and subsequently stained for 30 minutes at 4°C with fluorophore conjugated antibodies against CD19, CD20, CD22, CD27, or IgD (all BD Biosciences). Cells were then washed twice in FACS buffer and analysed on a FACS Canto2 (BD Biosciences). Where appropriate dead cells were excluded using 4,6-Diamidin-2-phenylindol (DAPI; Thermo Fisher).
To analyse B cells after 9–11 days in culture, plates were spun at 400×g for 3 minutes, supernatants were taken for analysis by ELISA and cells in pellets were re-suspended and pooled for each condition. Cells were washed with PBS and stained with NIR fixable live/dead dye (Molecular probes) for 15 minutes at room temperature and washed with FACS buffer (2%BSA, 2mMEDTA, PBS). Live/dead staining was followed by an incubation with Fc Block reagent (BioLegend) for 10 minutes at RT and finally staining with a mix of labelled antibodies: CD45-BV785, CD19-FITC, CD27-BV711, CD38-APC, CD138-PE, and IgD-BV421 (all BioLegend) following the manufacturers recommendations for 30 minutes at 4C. Stained cells were washed and fixed with 2% PFA in PBS for 10 minutes at RT. Stained cells were analysed in a Beckton Dickinson Fortessa with 355, 405, 488, 561, and 633nm lasers.
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2

Sorting of Naïve and Memory B Cells

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B cells were incubated with an antibody cocktail containing L/D marker (eBioscience Fixable Viability Dye eFluor 780) and antibodies CD10 BUV737 (BD #612826), CD20 PECy7 (BioLegend #302312) and CD27 BV711 (BioLegend #302834) and IgD BUV395 (BD #563813) for 30 min at 4°C. Labelled B cells were sorted into naïve (CD10CD20+CD27IgD+) and memory (CD10CD20+CD27+ and CD10CD20+CD27IgD) B cells using the FACSAria™ Fusion sorter (BD Biosciences) (gating strategy shown in Figure S1A).
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3

Comprehensive Flow Cytometry Immunophenotyping

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All flow cytometry data were acquired on BD LSRII flow cytometer, and results were analyzed using FlowJo software (v.X.0.7, Tree Star, Ashland, OR). Compensation was carried out using single-color controls of either cells or beads (OneComp eBeads, eBioscience). Appropriate isotype controls, fluorescence minus one (FMO), or NTD cells were used to validate gating. All samples were stained with a LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (Life Technologies) or Fixable Viability Dye eFluor 780 (eBioscience) before antibody staining. The following fluorochrome-conjugated mouse anti-human antibodies were used: CD3 PerCP-Cy5.5 (BioLegend, clone UCHT1), Vδ2 PE (BioLegend, clone B6), Vδ2 fluorescein isothiocyanate (FITC) (Miltenyi, clone 123R3), Vδ1 APC-Vio770 (Miltenyi, clone REA173), Vδ1 PE (Miltenyi, clone REA173), anti-TCR γδ PE-Vio770 (Miltenyi, clone 11F2), anti-TCR αβ Brilliant Violet (BV) 421 or PE-Cy7 (both BioLegend, clone IP26), QBend10 APC (R&D Systems, clone 4H11), CD27 BV711 (BioLegend, clone O323), CD45RA PE-Cy7 (BioLegend, clone H100), PD1 FITC (BioLegend, clone EH12.2H7), TIM3 BV605 (BioLegend, clone F38-2E2), and TCR Vβ12 FITC (Abcam, clone S511).
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Comprehensive T Cell Phenotyping Protocol

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T cell phenotyping was conducted in Oxford for all 16 UK volunteers and 27 Senegalese volunteers for whom there were cryopreserved cells available. PBMCs were thawed and rested for 2 h at 37°C in 2.5 µl/ml Benzonase Endonuclease (E1014-25KU; Sigma-Aldrich). One to two million PBMCs for each individual were stained in 50 µl in 96-well plates. Cells were incubated for 20 min at room temperature (RT) with the Live/Dead Aqua Dead Cell Stain Kit (Invitrogen) then surface stained at RT with CD14-eF506 (61D3, 1/50; eBioscience), CD19-eF506 (HIB19, 1/50; eBioscience), CD45RA-eV605 (HI100, 1/50; eBioscience), CD27-BV711 (O323, 3/50; BioLegend), CD28-BV421 (CD28.2, 1/50; BioLegend), CD4-APC (RPA-T4, 1/50; eBioscience), CD3-AF700 (UCHT1, 1/50; eBioscience), CD8-APC-AF780 (RPA-T8, 3/50; eBioscience), CCR7-FITC (G043H7, 1/50; BioLegend), CD57-PerCP-Cy5.5 (HNK-1, 1/50; BioLegend), and KLRG1-PE (14C2A07, 3/50; BioLegend). Cells were acquired immediately using a BD LSRII. Data analysis was conducted in FlowJo version 10.1 (Treestar Inc). Gating strategy is shown in Fig. S1.
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