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Si gel

Manufactured by Merck Group
Sourced in Germany, India

Si-gel is a type of laboratory equipment used for the separation and purification of chemical compounds. It is a solid, porous material composed of silica gel that is commonly used in chromatography techniques, such as column chromatography and thin-layer chromatography, to separate and isolate different components of a mixture. The core function of Si-gel is to facilitate the separation and purification of these chemical compounds.

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7 protocols using si gel

1

Isolation of Panduratin A from Boesenbergia rotunda

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The air-dried and finely powdered rhizomes of B. rotunda (2.5 kg) were percolated with 95% EtOH (6 L, 4 times × 7 days) at room temperature to give a crude EtOH extract (190.5 g) after solvent removal. The obtained EtOH extract was divided into two portions. Each portion was separated by VLC over Si-gel (250 g each, Merck Art. No. 7731), packing on a sintered glass funnel (i.d. 12.5 cm × packing height 4.5 cm), using EtOAc-hexanes and MeOH-EtOAc gradients as eluents, respectively. Fractions (500 mL each) were collected and combined based on their TLC behaviors to give frs. A1–A5. Fr. A4 (60.1 g, eluted with 25–100% EtOAc-hexanes), after three further consecutive Si-gel CC (Si-gel: Merck, Art. No 7734, 1st CC: 20% EtOAc-hexanes; 2nd CC: 60% CH2Cl2-hexanes; 3rd CC: 10% CH3COCH3-hexanes) afforded three separated frs. B1–B3. Fr. B3 (5.37 g) was further purified by Sephadex LH-20 CC (Sephadex LH-20: GE Healthcare Bio-Sciences AB, 10% MeOH-CH2Cl2), followed by recrystallization from EtOH-CH2Cl2 to provide pure panduratin A (3.18 g).
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2

Elucidation of Sesquiterpenes and Alkaloids via Chromatography

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For column chromatography (CC), Si-gel (107734, 107741, and 107749, Merck) and Sephadex LH-20 (Sigma–Aldrich) were used. For TLC chromatography, Si-gel (105554 and 105715; Merck) plates were used and visualized with óleum solution (sesquiterpenes) and Dragendorff’s reagent (alkaloids). The prep. HPLC chromatography was carried out on a Beckman 125P system equipped with an Ultrasphere semiprep column (10 × 250 mm) and a UV/visible diode array detector 168. Optical rotations were determined at 20 °C on a Perkin-Elmer 343 Plus polarimeter. IR Spectra were recorded in CHCl3 on a Perkin Elmer 1600 spectrophotometer. NMR spectra were recorded on a pulsed-field gradient Bruker Advance II-500 MHz spectrometer (solvent as internal standard CDCl3, at δH 7.26 and δC 77.0) and the Bruker software was used for DEPT, 1H, 1H-COSY (Homonuclear correlation spectroscopy), NOESY (Nuclear Overhauser Effect Spectroscopy), HSQC (Heteronuclear single quantum coherence spectroscopy) and HMBC (Heteronuclear Multiple Bond Correlation). EI and HR-EI-MS spectra were recorded in m/z on a Micromass Autospec spectrometer.
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3

Analytical Characterization of Compounds

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Optical rotations and IR spectra were measured on a JASCO P-1020 polarimeter and a JASCO FT/IR-4100 (JASCO Corporation, Tokyo, Japan) spectrophotometer, respectively. HRESIMS spectra were measured on a Bruker APEX II mass spectrometer (Bruker, Bremen, Germany). 1H and 13C NMR spectra were obtained on a Varian Unity INOVA 600 FT-NMR (or Varian Unity INOVA500 FT-NMR) instruments (Varian Inc., Palo Alto, CA, USA) at 600 MHz (or 500 MHz) for 1H, and 150 MHz (or 125 MHz) for 13C in CDCl3. Thin-layer chromatography (TLC) analyses were performed on precoated silica (Si) gel plates (Kieselgel 60 F-254, 0.2 mm), and Si gel (230–400 mesh) (Merck, Darmstadt, Germany) and C18-reversed phase Si gel (RP-18; 40–63 µM) (Parc-Technologique BLVD, Quebec, Canada) were used for column chromatography. Further purification and the isolation of compounds were performed by reversed-phase high-performance liquid chromatography (RP-HPLC) on a Hitachi L-2455 HPLC apparatus with a Supelco C18 column (250 × 21.2 mm, 5 μm).
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4

Spectroscopic Characterization of Natural Compounds

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Optical rotations were measured on a Jasco P-1020 polarimeter. UV spectra were recorded on a Shimadzu UV2401 PC spectrophotometer. IR spectra were determined on Bruker FT-IR Tensor-27 infrared spectrophotometer with KBr discs. ECD spectra were recorded on an Applied Photophysics spectropolarimeter. 1D and 2D NMR spectra were recorded on Bruker AV 600 or 800 MHz spectrometers using TMS as an internal standard. Chemical shifts (δ) were expressed in ppm with reference to the solvent signals, and coupling constant (J) values were reported in Hz. HRESIMS data were measured using an Agilent 1290 UPLC/6540 Q-TOF mass spectrometer. Sephadex LH-20 (GE Healthcare, Uppsala, Sweden), Si gel (200–300 mesh, Qingdao Marine Chemical Co., Qingdao, People’s Republic of China), and RP-18 (50 μm, Merck, Germany) were used for column chromatography (CC). Semi-preparative HPLC was performed on an Agilent 1260 instrument with a ZORBAX SB-C18 column (9.4 × 250 mm, 5 μm). Fractions were monitored by Si gel GF254 (Qingdao Marine Chemical Co., China) or RP-18 F254 (Merck, Darmstadt, Germany) plates. Spots were visualized under UV light and by spraying with 10% H2SO4 in EtOH followed by heating.
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5

Characterization of Compounds 1 and 2

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Melting points of the two compounds were determined using a Bock monoscope and were uncorrected. UV spectra were measured on a UNCAM UV/Vis spectrophotometer (Newington, USA). Mass spectra were determined on a Jeol mass spectrophotometer (Tokyo, Japan). 1H and 13C NMR spectra were obtained on Bruker DRX-300 spectrophotometer (Fallanden, Switzerland) with tetramethylsilane as an internal standard, and the heteronuclear multiple bond correlation (HMBC) was measured using a standard pulse sequence. High-performance liquid chromatography (HPLC) was carried out using a Shimadzu model LC-8A. The circular dichroism (CD) spectrum was done at the Department of Pharmacognosy, University of Mississippi, USA. TLC, column chromatography, and paper chromatography (PC) were performed on precoated Si GF256, Si gel (60–120 Mesh, Merck India), Sephadex LH-20 (Sigma, USA), and Whatman paper to characterize compounds 1 and 2.
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6

Comprehensive Characterization of Compounds 1 and 2

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Melting points (m. p.) of compounds 1 and 2 were determined using a Bockmonoscope. A UNCAM UV/vis spectrophotometer (Newington, United States) was used to record UV spectra. Mass spectra were determined on a Jeol mass spectrophotometer (Tokyo, Japan). 1H and 13C NMR spectra were obtained on Bruker DRX-300 spectrophotometer (Fallanden, Switzerland) with tetramethyl silane as an internal standard, and the heteronuclear multiple bond correlation (HMBC) was measured using a standard pulse sequence. High-performance liquid chromatography (HPLC) was performed using a Shimadzu model LC-8A. To get the circular dichroism (CD) spectrum, the facility at the Department of Pharmacognosy, University of Mississippi, United States, was used. The spectrums for both compounds are presented in the (Supplementary Figure S2). TLC, column chromatography, and paper chromatography (PC) were performed on precoated Si GF256, Si gel (60–120 Mesh, Merck India), Sephadex LH-20 (Sigma, United States ), and Whatman paper to characterize both compounds 1 and 2.
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7

Isolation of Bornyl Acetate from Artemisia tridentata

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B. tridentata essential oil (0.856 g, composite sample of female and male essential oils) was separated by column chromatography (CC) over 30.09 g of Si-Gel (230-400 mesh; Merck, Darmstadt, Germany) as the stationary phase. All the solvents employed for CC, and in the next sections were purchased from Cicarelli (San Lorenzo, Santa Fe, Argentina) and distilled prior to use. The CC elution was performed isocratically with a mobile phase mixture of petroleum ether-AcOEt (20:1) at a flow rate of 2.4 mL/min. To monitor CC separation, TLC was employed (Si-Gel60F 254 ; Merck) using the same mobile phase and p-anisaldehyde-sulphuric acid (Sigma-Aldrich) as a spray reagent. The chromatographic separation yielded 30 mg of pure bornyl acetate.
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