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8 protocols using anti ki 67 pe

1

Multi-parameter Flow Cytometry Analysis

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Flow cytometric analysis was performed using an LSR II flow cytometer (BD). Cell phenotypes were analyzed using combinations of anti-GITR-PE or -efluor450, anti-PD-1-PE, anti-FoxP3-PE, -efluor450 or -APC, anti-CD8-PE, anti-C45.1 PECy7, anti-Helios-FITC, anti-Eos-PE, anti-CD103-APC, anti-CD4-AlexaFluor700 (all from eBioscience), and anti-Neuropilin-1-PE or -APC, anti-CD103-PerCPCy5.5 (Biolegend) antibodies. Fixable viability dye efluor780 (eBioscience) was used in all experiments to exclude dead cells. Cell proliferation dye (CPD)-efluor450 and CFSE (both from eBioscience) were used to monitor cell proliferation. Anti-Ki67-PE (eBioscience) was used to identify dividing cells. Results were analyzed using FlowJo analysis software (Tree Star, Inc.).
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2

Cell Cycle Analysis of Hematopoietic Stem Cells

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Cells were stained and prepared as above, then fixed in 2% methanol-free paraformaldehyde diluted in PBS. Cells were then washed three times with PBS containing 5% NCS, permeabilized in 0.2% Triton-X 100, then stained with anti-Ki-67 (PE, eBioscience), and DAPI prior to analysis. For cell cycle analysis of GFP peak cells, LSKCD48Flk2CD150+ cells were first enrichment sorted prior to fixation, subsequent staining, and cell cycle analysis.
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3

Characterization of NK Cell Activation

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To assess proliferation and further characterisation of the differentiation of NK cells, PBMC were permeabilised and stained with anti-Ki67-PE (eBioscience, Hatfield, UK), Granzyme-B-FITC and Perforin-Cy5.5/PerCP (Biolegend, London, UK) directly ex-vivo. For intracellular staining for IFNγ production; PBMC were incubated with rhIL12 and rhIL15 (10ng/ml) (R&D systems, Abingdon, UK), for 19 hours at 37°C. 1mM monensin (Sigma-Aldrich, Gillingham, UK) was added for the final 3 hours. Cells were then stained with anti-CD3-Cy5.5/PerCP or CD3/Pe-Cy7, CD16-APCy7, CD56-FITC, and subsequently fixed and permeabilised, followed by intracellular staining for IFNγ-v450 (BD Biosciences, Oxford, UK). Dead cells were excluded by fixable live dead stain.
For degranulation, PBMCs were incubated with K562 cells (5:1 E:T ratio) for 3 hours following overnight stimulation with a combination of 50ng/ml rhIL12 and rhIL18 (Miltenyi Biotech). Anti-CD107a-PE mAb (BD Biociences, Oxford, UK) was added at the time of stimulation with target-cells and monensin (1mM) added during the last 2 hours of incubation prior to staining and acquisition.
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4

Flow Cytometry Analysis of Murine T Cells

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Surface staining for flow cytometry was performed after blocking with mouse IgG (Jackson ImmunoResearch, Suffolk, UK) using the following reagents (all eBioscience, Hatfield, UK): anti-CD4-APC and -APC-H7 (RM4-5), anti-CD25-PerCP-Cy5.5 and –PeCy7 (PC61.5), anti-CD44-APC (1M7), anti-CD62L-PE-Cy7 (MEL-14) and anti-Foxp3-APC (FJK-16s). Following surface staining, cells were treated with the Foxp3 staining kit (eBioscience) before staining with anti-Foxp3-APC (FJK-16s) and anti-Ki-67-PE (SolA15). For staining activated caspase-3, cells were plated at 106 cells per 50 μl and well in 96-well U-bottom tissue culture plates in RPMI/10% fetal calf serum and incubated for 1 h at 37 °C with FITC-DEVD-FMK (Abcam, Cambridge, UK) before continuing with surface staining. Data were collected on a FacsCantoII flow cytometer (Becton Dickenson, Erembodegem, Belgium) and analysed using Flowjo (Treestar, Ashland, OR, USA) software.
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5

Multi-marker Phenotypic Analysis of Peripheral Blood Leukocytes

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EDTA anticoagulated peripheral blood was used for phenotype analysis by flow cytometry. In detail, 200 μL of whole blood was lysed in 2 mL of VersaLyse at room temperature for 15 min. Then, cells were washed twice with FACS buffer, followed by resuspension in the appropriate antibody preparation and incubated for 20 min at 4°C. For intracellular staining of Ki-67 expression, we used permeabilization and fixation method using eBioscience perm/fix kit (ebioscience cat no. 88-8824-00). The following monoclonal antihuman antibodies were used in appropriate concentrations to stain cells: anti-CD45-Krome orange (Beckman Coulter, cat no. 96416), anti-CD14-PC5.5 (Beckman Coulter, cat no. A70204), anti-CD 19-APC-Alexa fluor 750 (Beckman Coulter, cat no.A94681), anti-CD27-PE (BD Pharmingen, cat no.555441), anti-CXCR3-APC (BD Pharmingen, cat no. 561732), anti-CXCR4-APC (BD Pharmingen, cat no. 560936), anti-CD95-APC (BD Pharmingen, cat no. 558814), anti-ki-67-PE (Ebioscience Cat no. 12-5699-42), and anti- IgD-FITC (BD Pharmingen, cat no. 555778). After staining, the cells were analyzed by 10-color flow cytometry (Navios, Beckman Coulter), with at least 20,000 CD19+ events collected for each analysis.
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6

Characterization of Immune Cells in Placenta

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Cell suspensions were prepared from the spleen or a mixture of all of the placentas and uteri, except one placenta for cytokine assays and one for histopathology assays. Mononuclear cells of the spleen or the mixture of placentas and uteri were obtained using mouse lymphocyte separation liquid (TBD Tianjin hao yang, China) with the density of 1.0830 ± 0.0001 g/ml (20°C) and washed in cold PBS. Cells were incubated with anti-CD4-Percp-cy5.5, anti-PD-1-PE, or anti-CTLA-4-PE at 4°C in the dark for 30 min, and then were washed twice. All of the above mAbs were from BD Pharmingen (United States). For intracellular Foxp3, pSmad3, and Ki-67 staining, cells were fixed and permeabilized in Fix/Perm buffer (eBioscience, United States) for 30 min and subsequently incubated with anti-Foxp3-APC, anti-pSmad3-PE, or anti-Ki-67-PE, in accordance with the manufacturer’s instructions. These mAbs were from eBioscience (United States). After washing three times with PBS, the cells were analyzed with a BD FACSCantoTM II flow cytometer (Becton Dickinson, United States) using BD FACSDiva 7.0 software.
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7

Assessing MIN6 cell proliferation

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MIN6 cells were pretreated, washed thrice with PBS, collected, and stained using an EdU assay kit (Beyotime Biotechnology) or anti‐Ki67‐PE (eBioscience) antibody. Data were obtained using CytoFLEXS flow cytometer (BD Biosciences) and analyzed using CytExpert.
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8

Multiparametric Flow Cytometry Profiling

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Cells were collected and subjected to three washes with PBS to ensure cleanliness and integrity. For the cell surface marker CD8, flow cytometry antibodies (PerCP, eBioscience) were introduced and incubated away from light at room temperature for 30 mins. Subsequently, the cells underwent a thorough three-time wash. For intracellular marker staining, cells were fixed and permeabilized using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience) and then stained with fluorochrome-conjugated antibodies, including anti-ki-67-PE, anti-IFN-γ-PE, and anti-TNF-α-FITC, all sourced from eBioscience, for 30 mins. Post-staining, 100 μl of PBS was added to each tube for cell resuspension and detected by BD FACSCalibur flow cytometer. The acquired data were quantified using FlowJo software (v10).
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