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37 protocols using sh 9000lab

1

Quantifying Circulating Cell-free DNA in Sepsis

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Whole blood was collected from each mouse by cardiac puncture under anesthesia and transferred into ethylenediaminetetraacetic acid-2Na tubes. The plasma was separated by centrifugation at 800 g for 10 minutes and immediately frozen at −80°C.
In order to explore the dynamics of cf-DNA under septic conditions, plasma was collected at 6 and 24 hours after the CLP operation from all mice, and the amount of cf-DNA in the plasma at each time point was quantified directly using the Quant-iT PicoGreen dsDNA Quantification Reagent Kit (Molecular Probes, Leiden, The Netherlands) and a fluorescence microplate reader (SH-9000 Lab, Hitachi High-Technologies, Tokyo, Japan) according to the manufacturers' instructions. PicoGreen specifically binds dsDNA, and after excitation at 485 nm, the dsDNA/PicoGreen fluorescence complex can be detected at 538 nm [20 (link)].
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2

Cystinyl-aminopeptidase Activity Assay

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Cystinyl-aminopeptidase (CAP) activity was determined using S-benzyl-cysteine-4-methylcoumaryl-7-amide (Bzl-Cys-MCA; Bachem, Bubendorf, Switzerland) by modifying a previously described method (Matsumoto et al., 2000 (link)). Briefly, 25 μL lysate was mixed with 25 μL PBS containing 200 μM Bzl-Cys-MCA, and incubated at 37°C for 15 min. The concentration of 7-amino-4-methylcoumarin was measured using an SH-9000 Lab multi-microplate reader (Hitachi High Tech, Tokyo, Japan) at excitation and emission wavelengths of 380 and 460 nm, respectively. The measured fluorescence intensities were converted to enzymatic activities using a standard curve generated with 7-amino-4-methylcoumarin.
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3

Assay for SIRT1 Deacetylase Activity

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Sirt 1 deacetylase activity was determined with the SIRT1 Fluorescent Activity Assay/Drug Discovery Kit (Enzo Life Science International) based on Fluor de Lys–SIRT1 substrate peptide. Protein extracts (10 μg) from mouse hearts or rat neonatal cardiomyocytes were incubated with the fluorogenic acetylated peptide substrate. The reaction was carried out at 37 °C for 1 h, and the fluorescent signal was measured at 360 nm excitation and 460 nm emission on a fluorescence plate reader (SH-9000Lab, Hitachi High-Technologies Corporation).
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4

Photodynamic Therapy: Quantifying PpIX Formation

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To investigate the formation of PpIX from 5-ALA, PpIX fluorescence was examined using an Olympus Fluoview FV1000 (Olympus Co., Tokyo, Japan) and read with a fluorescence spectrometer SH-9000Lab (Hitachi High-Technologies Co., Tokyo, Japan).
First, 1 × 105 EMT-6 cells were seeded in 35-mm Petri dishes containing 2 mL of cultivation medium. After 24 h of incubation, the dishes were divided into the following four groups: (1) Control group (no treatment), (2) 5-ALA group (treated with 1 mM 5-ALA), (3) 5-ALA + ART group (treated with 1 mM 5-ALA and 7.8 μM ART), and (4) 5-ALA + ARM group (treated with 1 mM 5-ALA and 7.8 μM ARM). Cells were incubated with 1 mM 5-ALA and concentrations of 7.8 μM ART or ARM for 4 h.
After washing with PBS, PpIX fluorescence was examined using an Olympus Fluoview FV1000. To obtain the cell extracts, cells were harvested by trypsinization, and centrifuged at 300× g for 5 min at room temperature. Whole-cell extracts were prepared with 50 μL Triton buffer (1% Triton X-100 in PBS). The fluorescence of cell lysates was read at Ex = 405 nm and Em = 635 nm with a fluorescence spectrometer SH-9000Lab.
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5

Quantifying dsDNA Content in ECM Samples

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After overnight lyophilization to measure dry weight of ECMs, dried samples were digested overnight at 65°C in papain digestion reagent consisted of 0.2 M sodium phosphate buffer (Na2HPO4 – NaH2PO4, pH 6.4) with 0.1 M sodium acetate, 0.01 M EDTA, disodium salt, 5 mM cysteine HCl, and 0.5 v/v% papain (crystallized suspension, Sigma-Aldrich). The dsDNA content in the supernatant of the papain digested samples was measured, in duplicate, with Quant-iT PicoGreen dsDNA Assay Kit (Thermo Fisher Scientific) using a fluorescence microplate reader (excitation 485 nm, emission 535 nm, SH-9000Lab, Hitachi High-Tech, Tokyo, Japan) according to the manufacturer’s instructions.
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6

Ovarian Cancer Cell Adhesion Assay

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Ovarian cancer cells at a density of 1 × 105 cells/well were plated in a 96-well plate precoated with 50 μg/mL FN, 50 μg/mL collagen type I, and 50 μg/mL laminin or 2 μg/mL VN. The concentration of ECMs was determined based on previous studies [43 (link), 44 (link)]. After incubation for 50 min at 37°C, cells were washed two times with PBS to discard non-adherent cells, fixed with methanol, and stained with Giemsa solution. The number of adhesive cells was quantified by adding 100 μL of 0.2% Triton X to lyse cells and measure the absorbance at 560 nm with a microplate absorbance reader (SH9000Lab; Hitachi, Tokyo, Japan).
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7

Neprilysin Activity Assay in PC12 Cells

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Neprilysin activity of PC12 cells was measured using a commercially available SensoLyte Neprilysin Fluorimetric Activity Assay Kit (AS-72223, AnaSpec, Inc.). At the end of cultivation, PC12 cell extracts (with the same concentration of protein) were diluted to bring the expected concentration within the range of the standard curve and reacted with 5-FAM/QXL™-520 Neprilysin substrate according to the manufacture’s instruction. After 60 minutes of incubation, fluorescence intensity was measured at excitation/emission = 490 nm/520 nm using a microplate reader (SH‐9000Lab, Hitachi, Japan).
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8

Colorimetric Cholinesterase Activity Assay

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We also performed colorimetric assay to determine cholinesterase activities according to the report by Ellman et al. (1961). Briefly, 10 µL enzyme (or enzyme-sample mixture) solution was mixed with 180 µL Ellman’s reagent [0.5 mM 5,5′-Dithiobis(2-nitrobenzoic acid) (DTNB) in 0.1 M phosphate buffer, pH 7.4] and incubated for 30 minutes at room temperature. Then 10 µL substrate [acetylthiocholine iodide (20 mM in double distilled water)] was added into the mixed solution and further incubated for another 10–30 minutes at room temperature. The absorbance was measured at 405 nm using a microplate reader (SH‐9000Lab, Hitachi).
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9

ORAC Assay for Antioxidant Evaluation

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Oxygen radical absorbance capacity (ORAC) assay kit was purchased from Cell Biolabs Inc., USA. The experiments were performed according to the manufacturer’s protocol with some modifications. The water-soluble vitamin E analog Trolox™ was used as the antioxidant standard. Briefly, samples (25 μL) were first added into the wells of a microplate (black 96-well plates, Nunc™ black microwell, Thermo Fisher, Scientific, Tokyo, Japan). Fluorescein (150 μL; 70 nM final concentration) and 2,2′-azobis(2-amidinopropane) dihydrochloride (AAPH) (25 μL; 12 mM final concentration) solutions were quickly mixed in a pipetting reservoir and added to the wells of samples rapidly by using a multi-channel pipette. The plate was immediately placed in a fluorescence microplate reader (SH-9000Lab, Hitachi, Tokyo, Japan), and the fluorescence intensities were recorded every 5 minutes for 60 minutes at 37°C with excitation/emission = 480 nm/520 nm. Seven calibration solutions using Trolox (0, 2.5, 5, 10, 25, 50, and 100 μM final concentrations) as the standard antioxidant were also carried out in the same run. All reaction mixtures were prepared in triplicate, and at least three independent runs were performed for each sample (Xiao and Miwa, 2017).
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10

PrestoBlue® Cell Viability Assay in PC12 Cells

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Cell viability in PC12 cells were measured by PrestoBlue® Assay according to the manufacturer’s protocol. At the end of cultivation, PC12 cells were incubated for 3 hours at 37°C with fresh medium supplemented with 10% PrestoBlue® (v/v; Thermo Fisher Scientific, Tokyo, Japan; A13261). The PrestoBlue® reduction by the cells expressed as fluorescence intensity units was measured on a microplate reader (SH‐9000Lab, Hitachi) with excitation/emission = 560 nm/590 nm.
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