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6 protocols using anti asc

1

Protein Extraction and Western Blot

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Total protein was extracted by RIPA buffer and the concentrations were determined by bicinchoninic acid (BCA) solution (Beyotime, Nantong, China). We then performed Western Blot on the basis of the standard process. This study included the following primary antibodies: anti-SIRT1 (Santa Cruz, USA,1:1000, mouse, Cat. No.:sc-74465), anti-NLRP3(Abcam, Cambridge, MA, USA, 1:1000, rabbit, Cat. No.: ab214185), anti-Caspase-1(Abcam, Cambridge, MA, USA, 1:1000, rabbit, Cat. No.: ab1872), anti-ASC (Bioss, Beijing, China, 1:1000, rabbit, Cat. No.: bs-6741R), anti-β-actin (Santa Cruz, USA, 1:1000, mouse, Cat. No.: sc-81178). Image J was used to quantify band intensities (National Institute of Health, Bethesda, MD).
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2

Immunofluorescence Analysis of NLRP3 and ASC

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Cells were prepared in 48-well plates and treated with LPS and CATH-2 as described above. After 6 h incubation, cells were washed three times with PBS and fixed in 4% paraformaldehyde (Sango Biotech, Shanghai, China) for 20 min at room temperature (RT). After three wash steps, cells were permeabilized with 0.1% Triton X-100 in PBS for 10 min. Subsequently, cells were blocked with 5% Bovine Serum Albumin (BSA) in PBS for 30 min. Then, cells were stained with primary antibody containing anti-NLRP3 (Bioss, Beijing, China) and anti-ASC (Santa cruz, CA, USA) for 1 h at RT. After the wash steps, cells were incubated with Goat anti-mouse IgG (H&L) Alexa fluor 488 and Goat anti-rabbit IgG (H&L) Alexa fluor 594 (Abcam, UK) for 1 h. DAPI (Beyotime Biotechnology, Shanghai, China) was added for 5 min to visualize cell nuclei. Finally, cells were washed and maintained in antifading medium (Solarbio, Beijing, China). Cells were observed using the fluorescence microscopy (Olympus, Tokyo, Japan).
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3

Western Blot Analysis of Retinal Proteins

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We extracted total protein from pulverized retinal samples and cell culture lysates which were mixed with RIPA buffer (Thermo Fisher Scientific, Inc.) with 1% PMSF. The concentration of total protein was tested with the BCA Protein Quantification Kit (Beyotime Biotechnology, Shanghai, China). After thermal denaturation (at 100°C for 10 min), the protein samples were run on 10% or 12% SDS-PAGE gels. Thereafter, the separated protein bands were transferred to PVDF membranes which were further blocked with 5% skim milk powder for two hours at room temperature. To identify specific protein expression, the membranes were incubated with specific primary antibodies (anti-NLRP3: 1:500, Abcam; anti-ASC: 1:500, Bioss, Beijing, China; anti-caspase-1: 1:1000, Bioss; anti-IL-1β: 1:1000, Bioss; anti-HIF-1α: 1:500, Bioss; anti-VEGF: 1:500, Bioss; anti-β-actin: 1:1000, Bioss) at 4°C overnight for sufficient reaction. Then, horseradish peroxidase labeled second antibodies (1:10,000, ZSGB-BIO, Beijing, China) were used to form the protein–antibody complexes that were inspected with the enhanced chemiluminescent assay. Protein band intensities were normalized to β-actin.
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4

Western Blot Analysis of Inflammation Mediators

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The levels of TLR4, MyD88, NF-κB-p65, TAK1, IRAK1, TRAF6, NLRP3, ASC, and caspase-1 were quantified by Western blotting. First, proteins were extracted by cutting and grinding tissue samples in RIPA lysis buffer. The lysates were then centrifuged, and the supernatants were collected. Protein concentrations were determined using a BCA protein quantitation kit (GeneCopoeia). Proteins were then separated by SDS–PAGE and subsequently transferred onto methanol-pretreated PVDF membranes (Millipore Corporation, USA). The membranes were then blocked with 5% skimmed milk powder at room temperature for 1 h and incubated with the following antibodies: anti-TLR4 rabbit pAb (Zen, 1 : 1,000); anti-TRAF6 rabbit pAb (Zen, 1 : 1,000); anti-TAK1 rabbit pAb (Zen, 1 : 1,000); anti-NF-κB-p65 mAb (Zen, 1 : 1,000); anti-MYD88 rabbit pAb (Zen, 1 : 800); anti-IRAK1 (PTG, 1 : 1,000); anti-ASC (Bioss, 1 : 1,000); anti-NLRP3 (Bioss, 1 : 1,500); and anti-caspase-1 (Bioss, 1 : 800). The membranes were subsequently incubated with the appropriate secondary antibodies for 1 h (HRP-conjugated goat anti-rabbit IgG (Ubio, 1 : 5,000) and HRP-conjugated goat anti-mouse IgG (Ubio, 1 : 5,000)). GAPDH and β-tubulin (Ubio) were used as reference proteins.
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5

Investigating Inflammatory Pathways in Cellular Assays

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L-NAT was obtained from Sigma Aldrich (St. Louis, MO., USA). Rat ELISA kit was purchased from NeoBioscience (Shanghai, China). The cell counting kit-8 (CCK-8) came from 7sea-Biotech (Shanghai, China). Anti-ASC, NLRP3, IL-1β, TLR4 and NF-κB were purchased from Bioss Antibodies (Beijing, China). Anti-Caspase 1 antibody came from Santa Cruz Biotechnology (Shanghai, China). TRIzol reagent was obtained from Life Technologies (USA). RTPA lysis was purchased from SolarBio Life Sciences (Beijing, China).
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6

Western Blot Analysis of Inflammasome Proteins

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Samples were subjected to 12% SDS-PAGE and were then transferred to nitrocellulose filter membranes. Membranes were blocked in 5% skim milk at 25 °C for 1.5 hours and were then incubated with the primary antibodies. Anti-Caspase-1 (1 µg/mL; BOSTER), anti-NLRP3 (1 µg/mL; BOSTER), anti-IL-1β (2 µg/mL; BIOSS, Shanghai, China), anti-IL-18 (0.76 µg/mL; Proteintech), anti-ASC (2 µg/mL; BIOSS, Shanghai, China), anti-PDCD6 (programmed cell death protein 6; 0.734 µg/mL; Proteintech), anti-Cleaved Caspase-1(1 µg/mL;Cell Signaling Technology), and anti-Actin (0.22 µg/mL; Proteintech) antibodies were used in this study. After 4 washes with PBS, membranes were incubated and reacted with horseradish peroxidase-conjugated secondary antibodies. Immunoreactive bands were developed with enhanced chemiluminescence reagents (Amersham, United Kingdom).
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