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6 protocols using anti per2

1

Western Blot Analysis of PER2 and γH2AX

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Cells were lysed in Laemmli 1x sample buffer. Lysates were centrifuged for 10 min at 13,000 RPM at RT. 10-30 μg of protein extract were separated on polyacrylamide gels and transferred onto polyvinylidene difluoride membranes (PVDF, Millipore, Burlington, MA, USA, IPVH0010) using a wet system. The membranes were blocked in tris-buffered saline (TBS) with 0.1% Tween20 and 5% skim milk (VWR, 84615). Blots were probed with the appropriate primary antibodies overnight at 4 °C, followed by secondary goat anti-mouse (Cell Signaling Technologies, 7076) or anti-rabbit antibodies (Cell Signaling Technologies, 7074) conjugated to horseradish peroxidase and developed using enhanced chemiluminescence (PerkinElmer, Waltham, MA, USA, NEL104001EA). Images were obtained on a Vilber Lourmat Fusion Solo S. Primary antibodies used: Anti-PER2 (Abcam, Cambridge, United Kingdom, ab180655) and anti-γH2AX (p Ser139) (Cell Signaling Technologies, Danvers, MA, USA, 9718).
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2

Western Blot Analysis of Protein Targets

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Cells were lysed in ice-cold NP-40 lysis buffer, and total protein was quantified using the Pierce TM BCA Protein assay kit (Thermofisher Scientific, Madrid, Spain). Equal amounts of protein were separated by SDS/PAGE, transferred onto nitrocellulose membranes, and probed with the indicated primary antibodies and the appropriate [59 (link)] HRP-conjugated secondary antibodies. Primary antibodies were used in the following concentrations: anti-Per2 (Abcam, Cambridge, UK) 1:500; anti CXCL16 1:2000; anti-IL12A 1:500 anti-Serpine1 (Biorbyt) 1:2000; anti-β-actin (Abcam, Cambridge, UK) 1:5000. Protein bands were visualized and measured with densitometry analyses using ImageJ software (version 1.8, Bethesda, Maryland, NIH, USA) [60 (link)]. Protein quantification was normalized with β-actin.
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3

Circadian Rhythm Protein Analysis

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For cell extracts, U2OS cells were lysed in SDS sample buffer and boiled. For tissue extracts, brains were homogenized and lysed in RIPA buffer. Protein samples were separated by SDS–PAGE, transferred to polyvinylidene difluoride membranes (Millipore), the membranes were incubated in 5% milk at room temperature for 1 hour, followed by overnight incubation with primary antibodies at 4°C, the membranes with combined primary antibodies then visualized using horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature, The blot signal was detected using Immobilon ECL substrate (Millipore). Primary antibodies included anti-CLOCK (MBL, 1:2000), anti-BMAL1 (Abcam, 1:1000), anti-PER2 (Abcam, 1:2000), anti-CRY1 (Bethyl Laboratories, 1:1000), anti-CRY2 (Bethyl Laboratories, 1:1000), anti-TDP-43 (Proteintech, 1:2000), anti-GAPDH (Proteintech, 1:5000) and anti-β-actin (Proteintech, 1:10000). Secondary antibodies were anti-mouse IgG-HRP and anti-rabbit IgG-HRP (CST). The time-course of protein level was analyzed with JTK_Cycle software package.64 (link)
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4

Western Blot Analysis of Circadian Proteins

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The amount of protein was determined using the BCA protein assay (Thermo Scientific, Rockford, IL, USA), and the same amounts of proteins were normalized for total protein. The protein samples were boiled in RIPA buffer (20 mM Tris–HCl (pH 7.5), 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% sodium dodecyl sulphate (SDS) and protease inhibitor cocktail; Sigma-Aldrich, St Louis, MO, USA), separated by SDS–polyacrylamide gel electrophoresis (PAGE), and transferred to polyvinylidene fluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). Non-specific binding was blocked with 5% skim milk in PBS-Tween20, and proteins were probed with anti-EAAC1 (Abcam, Cambridge, MA) at 1:1,000 dilution, anti-PER1 (Abcam) at 1:200, anti-PER2 (Abcam) at 1:1,000, anti-BMAL1 (Abcam) at 1:1,000, anti-CLOCK (Abcam) at 1:1,000 and anti-β-actin (Sigma-Aldrich) at 1:10,000 dilution. After a wash with PBS-Tween20, the horseradish peroxidase-labelled secondary antibodies were probed and detected with the ECL prime HRP detection kit (GE Healthcare, Piscataway, NJ, USA). We performed the quantification of the EAAC1 level using a serial dilution of ZT14 samples as the standard curve.
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5

Western Blot Analysis of Clock Proteins

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NK cells from control or chronic shift‐lag mice were transfected with Per1‐siRNA and Per2‐siRNA or negative control siRNA. After 24 hours, the cells were pelleted and lysed in RIPA buffer (Beyotime). Total protein was isolated, and the concentration was estimated using a BCA assay (Beyotime). Equal amounts of protein (50 μg) were separated on 12% SDS‐PAGE gels (Beyotime) and transferred to PVDF membrane (Thermo Fisher). The membranes were blocked with 5% BSA for 2 hours at room temperature and subsequently incubated overnight at 4°C with the following specific antibodies: anti‐Per1 (1:1000, Abcam), anti‐Per2 (1:1000, Abcam), anti‐CLOCK (1:1000, Abcam) and anti‐β‐actin (1:1000, Beyotime). The following day, the membranes were washed and incubated with a secondary antibody (rabbit, 1:1000, Beyotime) for 2 hours at room temperature. Protein bands were visualized using ECL Western blotting substrate on a BioRad ChemiDoc MP system (BioRad, CA).
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6

Measuring Protein Stability in HEK293T Cells

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To determine protein stability, the FLag-mBMAL2 and FLag-mBMAL2-mut plasmids were transfected into HEK293T cells. After 36 hours, the cells were treated with 100 μg/mL CHX (MedChemExpress). Collection of the transfected cells was performed from 0 to 6 hours after CHX treatment. RIPA buffer (Beyotime Biotechnology) containing 1 mM phenylmethanesulfonyl fluoride (PMSF) was used to make whole-cell extracts.
The protein samples were subjected to denaturing 8% or 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene difluoride (PVDF) membranes. For the block buffer, 5% nonfat dry milk in Tris-buffered saline containing 0.05% Tween 20 was used. Anti-FLAG (Sigma, 1:1000) and anti-PER2 (Abcam, 1:1000) antibodies were used to detect mBMAL2 (or mBMAL2-mut), and PER2, respectively.
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