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5 protocols using pten a2b1

1

Investigating SENP1-mediated PTEN regulation

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LNCaP, PC3, HEK293, wild-type MEF, and SENP1-deficient MEF cells were maintained as previously published [6 (link), 7 (link)]. The Flag-tagged SENP1 SENP1m, and PTEN vector plasmids were previously generated [39 (link), 40 (link)]. The following antibodies and recombinant proteins were utilized: PTEN (A2B1; mouse-monoclonal from Santa Cruz and 138G6; rabbit-monoclonal from Cell Signaling, Beverly, MA, USA), SUMO1 (Cell Signaling), Ubiquitin (P4D1, Santa Cruz), Flag (M2; Sigma-Adrich, St Louis, MO, USA), Actin (Santa Cruz), Lamin (Santa Cruz), GAPDH (ab9484; abcam, Cambridge, MA, USA), and recombinant PTEN (MyBioSource, San Diego, CA, USA).
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2

Immunoblotting Analysis of Key Signaling Proteins

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This has been performed as previously described [34 (link)]. Antibodies directed against alpha smooth muscle actin (α-SMA), transforming growth factor beta 1 (TGF-β1, 2AR2), Stromal-derived factor-1 (SDF-1), AUF1 (ab50692) and IL-6 were purchased from Abcam (Cambridge, MA); Lin28B (D4H1), NF-kB (p50), NF-kB (p65) (D14E12), AKT (C73H10), p-AKT (Thr308), STAT3 and pSTAT3-Tyr705 (D3A7) from Cell Signaling (Danvers, MA); p16INK4a from BD Biosciences (San Jose, CA); p21 (F-5), PTEN (A2B1) and Glyceraldehydes-3-phosphate dehydrogenase (GAPDH, FL-335) were purchased from Santa Cruz (Santa Cruz, CA).
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3

Immunoblotting for Protein Signaling Pathways

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Immunoblotting was performed as described previously (Possik et al., 2014 (link)). The following antibodies were used: p-ERK1/2 (E10, 9106), ERK1/2 (9102), p-MEK (41G9, 9154), MEK (L38C12, 4694), p-AKT (D9E, 4060), and p-MET (Tyr1234, 3077) from Cell Signaling Technology; BRAFV600E (VE1) from Spring Bioscience; B-RAF (F7), EGFR (1005), MET (C-28), PDGFR (C20), AXL (C-20), and PTEN (A2B1) from Santa Cruz Biotechnology; MITF (ab12039) from Abcam; and vinculin (V9131) from Sigma.
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4

Extracellular Vesicle Immunocharacterization Protocol

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Immunoblotting: PSMA (F-2, 1:1000, Santa Cruz Biotechnologies), PTEN (A2B1, 1:1,000, Santa Cruz Biotechnologies), calnexin (37, 1:1,000), TSG101 (51, 1:1,000, BD Biosciences), beta actin (15G5A11/E2, 1:10,000, ThermoFisher Scientific), CD9 (HI9a, 1:1,000, BioLegend), ALIX (3A9, 1:1,000, Cell Signaling), TSG101 (EPR7130(B), 1:1,000), ARV7 (EPR15656, 1:1,000, Abcam), PSMA (D4S1F, 1:1,000), CD9 (D3H4P, 1:1,000), beta-actin (3E5, 1:1,000, Cell Signaling Technology), HRP-conjugated anti-mouse and anti-rabbit antibody (Dianova, 1:10,000).
Immunomagnetic bead isolation: biotinylated CD9 (HI9a), PSMA (LNI-17) or the isotype control antibody (MOPC-21, BioLegend).
Spotting: CD9 (HI9a), CD63 (H5C6), CD81 (5A6), ROR1 (2A2), the isotype control (MOPC-21, BioLegend), EpCAM (VU-1D9, ThermoFisher Scientific).
Detection on the microarray: APC-labelled CD9 (HI9a), CD63 (H5C6), CD81 (5A6, BioLegend), Cy3-labelled anti-mouse IgG1 antibody (1:5,000, Dianova).
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5

PTEN and AKT Protein Analysis

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Protein extraction was performed using a lysis buffer containing a protease inhibitor cocktail (Complete; Sigma-Aldrich), and protein quantification was performed using the bicinchoninic acid method (Pierce; Rockford, IL). 50 μg of protein per condition was run on SDS-PAGE gels and then transferred onto PVDF membranes (BioRad), which were subsequently blocked for 1 h with a solution of 5% skim milk/in TBS/Tween 0.1%. Membranes were incubated overnight with primary antibodies against PTEN (A2B1) (diluted 1:250; Cat No. 7974, Santa Cruz Biotechnology), AKT (diluted 1:5000; Cat No. 4691, Cell Signaling Technology), phospho-AKT (diluted 1:1000; Cat No. 9271, Cell Signaling Technology), β-Actin (diluted 1:10,000; Cat No. A3854, Sigma Aldrich), ERK1/2 (diluted 1:5000; Cat No. 9102S, Cell Signaling Technology) and pERK1/2 (diluted 1:500; Cat No. 9106S, Cell Signaling Technology). Subsequent washes were performed with TBS/Tween 0.1% and then membranes were incubated for 1 h with anti-rabbit and anti-mouse secondary antibodies diluted 1:3000 (Invitrogen), followed by washes with TBS/0.1% Tween. The presence of the proteins was revealed by chemiluminescence (Perkin-Elmer). Images were captured and analyzed using a UVP BioImaging System and LabWorks Image Acquisition and Analysis Software (UVP, Inc. Upland, CA).
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