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3 protocols using d8418 250ml

1

Antibody-Based Protein Interaction Analysis

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The following antibodies were used: anti-GFP (Santa Cruz, sc-9996 for coimmunoprecipitation; Abcam, ab32146 for immunoblots), anti-FLAG horseradish peroxidase-conjugated (Sigma, A8592), anti-p-SEK1/MKK4 (Cell Signaling, CST-9151), anti-GST (Santa Cruz, sc-138), anti-alpha-tubulin (Santa Cruz, sc-53030), anti-DLK (ThermoFisher Scientific, PA5-32173 for coimmunoprecipitation and immunohistochemistry; Antibodies Incorporated, 75-355 for immunoblot), anti-GAPDH (Santa Cruz, sc-32233), anti-LC3A/B (Cell Signaling, CST-12741), anti-HA (Abcam, ab9110), anti-Xpress (ThermoFisher Scientific, R910-25), anti-SUMO2/3 (Abcam, ab3742), anti-FLAG (Cell Signaling, 14793S), anti-BRN3A Alexa Fluor 594 (Santa Cruz, sc-8429 AF594), and anti-beta III tubulin (Abcam, ab41489). We dissolved all chemicals in dimethyl sulfoxide (Sigma, D8418-250ML) except for vincristine (Sigma, V8879), which was dissolved in methanol. Controls were treated with dimethyl sulfoxide as vehicle or methanol in the case of vincristine controls. We used vincristine at 200 nM, bafilomycin (Sigma, B1793) at 100 nM, caspase inhibitor (Sigma, 400012) at 1 and 5 μM, pan-caspase inhibitor (R&D systems, FMK001) at 10 and 50 μM, and MG-132 (Sigma, M7449) at 10 μM.
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2

Actin Cytoskeleton Disruption Techniques

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Cells were treated with 100 µM CK-666 (Sigma-Aldrich, SML006-5MG) in DMSO (Sigma-Aldrich, D8418-250ML) to block the Arp2/3 complex and branched actin assembly. To block the polymerization of all F-actin structures, cells were treated with 10 µM Latrunculin A (LatA; EMD Millipore) dissolved in DMSO for 30 minutes prior to imaging. Control cells were treated with 0.1% DMSO in YE media.
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3

Isolation and Cryopreservation of Human SCAP

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SCAP at a passage of 3–5 were used in this experiment. SCAP were isolated from a human tooth. We obtained Institutional Review Board approval at Seoul National University Hospital (Seoul, South Korea; IRB number CRI05004). Informed consent was obtained from all participants. All experiments were performed in accordance with the Declaration of Helsinki. The manuscript does not contain information or images to identify study participants. Therefore, patient consent for the publication of our experimental data does not seem necessary. Basal media is composed of Alpha-MEM, FBS, and an antibiotic (all of them from Welgene, Korea) at a ratio of 100:10:1. This was used as a complete media. The cells were cultured in an incubator (371 Steri Cycle CO2 Incubator, Thermofisher, USA) at a temperature of 37 °C and 5% carbon dioxide. For cryopreservation, EDTA-trypsinized cells were suspended in freezing media of basal media, FBS, and dimethyl sulfoxide (DMSO) (D8418-250ML, Sigma, USA) in a ratio of 6:3:1. A mixture of cells and freezing media was placed in a freezing vial and placed in isopropanol at − 70 °C for 12 h. After 12 h, freezing vials were moved to the liquid nitrogen tank for more than 24 h. Frozen cells were used in experiments after thawing in a 37 °C-waterbath for 2 min.
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