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113 protocols using qnano

1

TRPS Characterization of Liposomes and Exosomes

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TRPS measurements were performed with the qNano (Izon Science, UK). The instrument was set up and calibrated as per manufacturer recommendations. For liposome samples, a polyurethane nanopore rated for particles between 100 and 250 nm (NP150, Izon Science, UK) was used to perform all measurements, and was axially stretched to 48 mm, as measured from adjacent teeth on the qNano unit. For exosome samples, a polyurethane nanopore rated for particles <100 nm (NP100-, Izon Science, UK) was used, and was axially stretched to 48 mm, as measured from adjacent teeth on the qNano unit. 40 µL of sample diluted to an appropriate particle content in PBS + 0.05% Tween-20 was measured with this system. Optimally, measurement durations were greater than two minutes except where system instability limited this. All measurements were calibrated with 115 nm (NP100-) or 212 nm (NP150) polystyrene beads appropriately diluted (Izon Science, UK). Data processing and analysis were carried out on the Izon Control Suite software v2.2 (Izon Science, UK). Pore sensitivity was defined by the smallest possible particle able to be seen above system noise (i.e. pulse magnitudes >0.05 nA), as detailed in the following work (paper in review).
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2

Nanoparticle Size Characterization by qNano

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The concentration and size distribution of the obtained samples were determined by qNano (Izon Science, Christchurch, New Zealand). First, all samples were serially diluted (1 : 100, 1 : 1000, 1 : 10 000) and analyzed starting at the lowest dilution by NP100 (size range: 50–330 nm) and NP400 (185–1100 nm) nanopores stretched between 45 and 48 mm. Only measurements with a particle count > 500 or a time period of 5 min, linear particle rate in time, and noise below 15 pA were recorded. The pressure was adjusted to achieve a particle flow rate > 100/s and a stable current between 120 and 150 nA. Calibration was performed using calibration beads of a known concentration and size [CPC100 (110 nm) and CPC400 (340 nm), both from Izon Science] diluted at 1 : 1000 according to the manufacturer’s protocol. All samples, including calibration samples, were vortexed for 30 s before obtaining measurements. Data were analyzed by control suite V3.3 software for qNano (Izon Science).
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3

Nanoparticle Characterization of iEVs

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Size and concentration of the iEVs were characterized by RRPS using qNANO (Izon science Lyon, France). At least 2 min recording time was used for each sample. NP150 and NP400 nanopores were used to measure small and large iEVs, respectively. All the qNANO data were recorded and analysed by Izon Control Suite v.3 (Izon science, Lyon, France).
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4

Fullerene Derivatives: Physicochemical Characterization

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This study was carried out in strict accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health. The protocol was approved by the International Animal Care and Use Committee of the University of North Carolina at Greensboro (Protocol Number: 11–02). All techniques were performed under isoflurane anesthesia, and all efforts were made to minimize suffering.
A panel of fullerene derivatives was synthesized at Luna Innovations and characterized for particle size using dynamic light scattering (Malvern Instruments, Zetasizer Nano ZS, Westborough, Massachusetts, USA), qNano (Izon Science, qNano, Cambridge, Massachusetts, USA) and nano particle tracking analysis, (Malvern Instruments, Nanosight LM10, Westborough, Massachusetts, USA), zeta potential (Malvern Instruments, Zetasizer Nano ZSP, Westborough, Massachusetts, USA), NMR (Agilent Technologies, 400 Mhz NMR Spectrometer, Santa Clara, California, USA), and FT-IR (Agilent Technologies, Varian 670 FT-IR, Santa Clara, California, USA). A representative physiochemical characterization schematic for the two fullerene derivatives used for the in vivo studies (ALM, a liposome encapsulated C70 fullerene and TGA, a water-soluble C70 fullerene conjugated with four glycolic acids) is shown in [27 (link),31 (link)].
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5

Nanoparticle Concentration Analysis via TRPS

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Tunable resistive pulse sensing (TRPS) was performed using a qNano (Izon, Cambridge, MA, USA) according to the manufacturer’s instructions. Samples were diluted 50-fold with PBS (-) and were measured using TRPS. The measured value was multiplied by the dilution factor to calculate the concentration of nanoparticles in the sample.
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6

Extracellular Mitochondria Isolation and Characterization

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Particle size following extracellular mitochondria isolation by FACS was
determined by qNano (iZON). Nanopore-based detection allows particle-by-particle
assessment of complex mixtures. Optimization of pore size to particle size, by
adjusting the stretch of the pore, allows highly accurate measurement 34 (link). Particles containing
mitochondria were sorted using FACS analysis, then particle sizes were
quantified by NP400 and using CPC400 calibration particle.
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7

Exosome Particle Size Analysis by TRPS

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Extracted exosome samples were examined for particle size using TRPS (qNano; Izon Science Ltd., New Zealand) according to the manufacturer’s instructions, and the data were analyzed with Izon Control Suite v.3.3.2.2000 (Izon Science Ltd.).
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8

Extracellular Mitochondria Isolation and Characterization

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Particle size following extracellular mitochondria isolation by FACS was
determined by qNano (iZON). Nanopore-based detection allows particle-by-particle
assessment of complex mixtures. Optimization of pore size to particle size, by
adjusting the stretch of the pore, allows highly accurate measurement 34 (link). Particles containing
mitochondria were sorted using FACS analysis, then particle sizes were
quantified by NP400 and using CPC400 calibration particle.
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9

Bacterial Surface Charge and Size Analysis

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Relative surface charge and size distribution analysis of WT, and mutants chiA and chiB was performed using a qNano (Izon Science). The qNano utilizes Tunable Resistive Pulse Sensing technology to allow for a high-throughput, particle-by-particle, analysis of particle size, surface charge, and electrophoretic mobility [20] (link), [43] (link). All qNano experiments were performed using the manufacturer's established protocols [19] (link)–[21] , [43] (link). Briefly, overnight cultures of WT, chiA, and chiB were pelleted (five minutes at 4,500×g) and washed three times with sterile PBS. For each measurement, 40 μl of the washed bacterial suspension was added to the top fluid cell and a minimum of 1,000 blockade events were recorded. Measurements were taken at 48.49 mm of applied stretch with an applied voltage of 0.10 V. An applied pressure of 5 cm H2O was applied to the top fluid cell using the Izon Science variable pressure module. The size distribution and relative surface charge analysis was performed using IZON proprietary software V2.2.
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10

Characterization of mEVs and Liposomes

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Size distribution and concentration of H9c2-derived mEVs and DOPC liposomes were determined by tuneable resistive pulse-sensing analysis using a qNano instrument (IZON Science) as described previously [19]. In case of mEVs, twofold dilution of the sample (derived from 24 mL cell supernatant) was prepared in 0.2 μm filtered PBS. For DOPC liposomes, the DOPC liposome standard (with 1 mg/mL DOPC concentration) was 10-fold diluted with 0.2 μm filtered PBS and filtered with a 0.8 μm mesh filter (Millipore). Both samples were measured by qNano. At least 700 particles were counted using 10 mbar pressure (mEV) and 3 mbar pressure (DOPC liposomes) using a NP400 nanopore membrane. Calibration was performed with known concentration of beads CPC400G (mean diameter: 340 nm, purchased from IZON), diluted 1:1000 in 0.2 μm filtered PBS. Results were evaluated using IZON Control Suite 3.2 software.
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