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6 protocols using fluoview fv1000 confocal laser scanning microscope system

1

Embryo Immunostaining Protocol

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Embryos were fixed with 4% formaldehyde (Polysciences) for 10 min, permeabilized with 0.5% Triton X-100 (Sigma Aldrich) for 30 min, and then blocked with blocking solution (10% Fetal Bovine Serum (Hyclone), 0.1% Triton X-100) for 1 hr at room temperature, or overnight at 4°C. Primary Antibodies used were: mouse anti-CDX2 (Biogenex, CDX2-88), goat anti-SOX2 (Neuromics, GT15098), rabbit anti-PARD6B (Santa Cruz, sc-67393), rabbit anti-PARD6B (Novus Biologicals, NBP1-87337), mouse anti-PKCζ (Santa Cruz Biotechnology, sc-17781), rat anti-CDH1 (Sigma Aldrich, U3254), mouse anti-ZO1 (Thermo Fisher Scientific, 33–9100), mouse anti-YAP (Santa Cruz Biotechnology, sc101199), rabbit anti phospho-YAP (Cell Signaling Technologies, 4911), chicken anti-GFP (Aves, GFP-1020). Stains used were: Phallodin-633 (Invitrogen), DRAQ5 (Cell Signaling Technologies) and DAPI (Sigma Aldrich). Secondary antibodies conjugated to DyLight 488, Cy3 or Alexa Flour 647 fluorophores were obtained from Jackson ImmunoResearch. Embryos were imaged using an Olympus FluoView FV1000 Confocal Laser Scanning Microscope system with 20x UPlanFLN objective (0.5 NA) and 5x digital zoom. For each embryo, z-stacks were collected, with 5 µm intervals between optical sections. All embryos were imaged prior to knowledge of their genotypes.
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2

Evaluating Endothelial Cell Responses

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HUVECs were seeded at 1 × 104 cells/well onto coverslips in a 12-well plate until 60% confluent. Serum-starved cells were treated with or without 100 μM CaD/25 ng/mL VEGF for 15 min (for actin filaments detection) or 2 hours (for ZO-1 expression). The cells were then fixed in 4% paraformaldehyde and then permeabilized with 0.5% Triton X-100 (for ZO-1 staining the cells were not permeabilized). Actin filaments were stained by phalloidin-Alexa fluor 488 (1:250) for 1 h at room temperature and nuclei were detected by DAPI. Images were captured by Leica DM 1400B confocal microscope. For ZO-1 detection, the cells were stained with ZO-1 antibody (1:100) and subsequently with Alexa fluor 488 secondary antibody (1:250). The slides were examined with Olympus Fluoview FV1000 confocal laser scanning microscope system (Olympus, Tokyo, Japan). The concentration of VEGF and pVEGFR-2-Tyr1175 in mouse kidney lysates was measured using commercially available ELISA kits.
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3

Quantifying GFP Fluorescence in Seedling Roots

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Fluorescence of TCS:GFP was observed in 8-day-old seedlings (T2) of wild types or abci20–1/21 expressing TCS:GFP using Olympus FLUOVIEW FV1000 confocal laser scanning microscope system. Excitation and emission were at 488 nm, and 520 nm, respectively. Fluorescent intensity was measured in the root tip and calculated using Image J (https://imagej.nih.gov/ij/index.html; Schneider et al. 2012 (link)). The background fluorescence intensity was subtracted from the total intensity, following the method described previously (Ali et al. 2019 (link)).
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4

Analysis of Nanog-expressing Embryos

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Mice carrying NanogmCherry were naturally mated and then embryos were obtained from pregnant moms around embryonic day (E) E3.75. Embryos were then processed for immunofluorescence, as previously described (O'Hagan et al, 2021 (link)), using the following reagents: goat-anti-SOX17 (1:2000; R&D; AF1924), goat-anti-SOX2 (1:2000; Neuromics; GT15098), donkey-anti-goat Alexa488 (1:400; Invitrogen; A-11055), and DRAQ5 (1:400; Cell Signaling Technology; 4084).
Embryos were imaged using an Olympus FluoView FV1000 Confocal Laser Scanning Microscope system with a 20 × UPlanFLN objective (0.5 NA) and 3 × digital zoom. For each embryo, z-stacks were collected with 5-μm intervals between optical sections. Optical sections are displayed as an intensity projection over the z-axis.
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5

Immunostaining Embryonic Stem Cells

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Embryos were fixed in 4% formaldehyde (Polysciences) for 10 minutes then immediately permeabilized for 30 minutes in 0.5% Triton X-100 (Millipore-Sigma, T8787) diluted in PBS.
Embryos were stored in blocking buffer (10% FBS (Hyclone), 0.1% Triton X-100, PBS) for at least 18 hours and no longer than 5 days prior to incubation with primary antibodies. Primary antibodies were diluted in blocking buffer to the following concentrations: rabbit IgG anti-Nanog (Reprocell, RCAB002P) 1:400, goat IgG anti-SOX17 (R&D systems, AF1924) 1:2000 and applied overnight at 4ºC. DyLight 488 (Jackson ImmunoResearch, 805485180) and Cyanine3 (Jackson ImmunoResearch, 711165152) conjugated antibodies targeting IgG were diluted at 1:400 in blocking buffer and incubated for 1 hour at ambient temperature to detect primary antibodies. Nuclei were labelled by 5-minute incubation with DRAQ5 (Cell Signaling, 4084) diluted 1:400 in blocking buffer. Confocal z-stacks spanning the entire embryo were collected with 5 µm spacing on the Olympus FluoView FV1000 Confocal Laser Scanning Microscope system with 20x UPlanFLN objective (0.5 NA) and 5x digital zoom.
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6

Immunofluorescence Imaging of Embryos

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V5 was detected by mouse anti-V5 antibody (Invitrogen). Embryos were fixed with 4% formaldehyde (Polysciences) for 10 min, permeabilized with 0.5% Triton X-100 (Millipore Sigma) for 30 min, and then blocked in 10% Fetal Bovine Serum (Hyclone) with 0.1% Triton X-100 for 1 hr at room temperature. Embryos were then incubated in V5 at a dilution of 1:400 in blocking solution at 4 ºC overnight. The next day, embryos were stained with goat anti-mouse Alexa488
(Invitrogen) at a 1:400 dilution in blocking solution for 1 hour at room temperature. Embryos were then stained for 10 min at room temperature in 50 µM Hoechst nucleic acid stain (Thermo Fisher). Split mNG2 embryos were imaged either fixed or live after Hoechst staining. Imaging was performed using an Olympus FluoView FV1000 Confocal Laser Scanning Microscope system with 20x UPlanFLN objective (0.5 NA) and 5x digital zoom. For each embryo, z-stacks were collected with 3 µm intervals between optical sections. Optical sections are displayed as an intensity projection over the Z axis.
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