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Rnaiso plus

Manufactured by Takara Bio
Sourced in Japan, China, United States, Germany, France, Canada

RNAiso Plus is a reagent for the isolation and purification of total RNA from various biological samples, including animal cells, tissues, and microorganisms. It is based on the guanidinium thiocyanate-phenol-chloroform extraction method and provides high-quality RNA with minimal DNA and protein contamination.

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4 358 protocols using rnaiso plus

1

RNA Extraction from Plant Tissue and HeLa Cells

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Oryza sativa subsp. Indica was grown and maintained in a green house under controlled conditions of a 32°C temperature, 70–80% humidity, and a 16/8 hours day–night cycle. Old leaf materials (35–42 days, 300 mg) were collected and ground to fine powder using liquid nitrogen in a pre-chilled mortar–pestle. RNA was extracted using RNAiso Plus (Takara Bio, Kusatsu, Shiga, Japan) reagent by following the method as mentioned previously (Guria et al., 2019 (link)).
HeLa cells were obtained from NCCS Pune, India, and were maintained under an atmosphere of 37°C, 5% CO2 in RPMI-1640 media (with L-Glutamine, Gibco, Thermo Fisher Scientific, Waltham, MA, United States) supplemented with 10% fetal bovine serum (Gibco, Thermo Fisher Scientific, Waltham, MA, United States) and 1% penicillin–streptomycin (HiMedia, Mumbai, Maharashtra, India) antibiotics. The cells were harvested in 1 ml of RNAiso Plus (Takara Bio, Kusatsu, Shiga, Japan) using a cell scrapper upon reaching 70–80% confluent state. The collected HeLa cells were passed four to five times through a 1 ml syringe in order to lyse the cells, and total RNA was isolated using RNAiso Plus (Takara Bio, Kusatsu, Shiga, Japan) using the manufacturer’s protocol.
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2

Evaluating miR-21 and Smad7 in HUVEC Cells

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HUVEC cells cultured in 12‐well plate were transfected with mimic/mimic NC (RioboBio), inhibitor/inhibitor NC (RioboBio) or treated with TGF‐β1 at 10 ng/mL (Sigma)/TGF‐β1+ inhibitor. 48 hours later, cells were lysed with RNAiso plus (TaKaRa), while cardiac tissues were lysed with RNAiso plus and homogenized. Total RNA was reverse‐transcribed into cDNA using M‐MLV reverse transcription kit (Vazyme). qRT‐PCR was conducted with AceQ qPCR SYBR Green Master Mix (Q141‐02/03, Vazyme) on the ABI StepOnePlus™ Real‐Time PCR System. The primers sequence is as follows: SMAD7, 5′‐GGACGCTGTTGGTACACAAG‐3′, 5′‐GCTGCATAAACTCGTGGTCATTG‐3′; α‐SMA, 5′‐CAGGGGGCACCACTATGTAC‐3′, 5′‐CGGCTTCATCGTATTCCTGTT‐3′; CD31, 5′‐CGTGGTCAACATAACAGAACTA‐3′, 5′‐GTCCGACTTTGAGGCTATCT‐3′; β‐actin, 5′‐GGACTTCGAGCAGGAGATGG‐3′, 5′‐GCACCGTGTTGGCGTAGAGG‐3′.
For reverse transcription and qRT‐PCR analysis of miR‐21, two different Bulge‐Loop™ miRNA qRT‐PCR Primer sets were used to detect the transcriptional level of miR‐21, Bulge‐Loop™ miR‐21 qPCR Primer Set and Bulge‐Loopies™ U6 qPCR Primer Set (RioboBio).
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3

Isolation and Amplification of Insect P450 cDNA

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Total RNA for amplification of P450 cDNA fragments was isolated from the abdomen of adult
D. helophoroidesusing RNAiso Plus (Takara Bio,
www.takarabio.com). Five adult individuals were dissected to remove their abdomens, which then were ground with liquid nitrogen until becoming a powder. The powder was quickly transfered into a 1.5mL centrifuge tube and homogenized with 1mL RNAiso Plus (Takara). The process of total RNA extraction and purification was carried out according to the manufacturer’s instructions. The total RNA (A260/A280 = 1.865) was dissoved in 20 µL DEPC treated H2O and stored at -80°C. The first strand of cDNA was synthesized using 2 µg of the total RNA using a TIANScript First Strand cDNA Synthesis Kit (Tiangen Biotech,
www.tiangen.com) following the manufacturer’s instructions. The reaction mixture was stored at -20°C.
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4

RNA Isolation and Quantification Protocol

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Total RNA was extracted from the HOEC or OSCC cell lines and tissues with RNAiso Plus (TaKaRa, Japan) or the mirVana Paris kit (Life Technologies, USA), according to the manufacturer’s guidelines. For mRNA quantification, the PrimeScriptVR RT reagent kit (TaKaRa, Japan) was utilized to reverse transcribe the RNA extracted with RNAiso Plus to cDNA. After that, the RNA was subjected to specific primer-based reverse transcription-quantitative PCR (RT-qPCR) using SYBR Premix Ex Taq (TaKaRa, Japan). For miRNA quantification, the total RNA extracted with the mirVana Paris kit was reverse transcribed and quantified with the All-in-One miRNA RT-qPCR detection kit (GeneCopoeia, China). After that, RT-qPCR was performed with the 7900HT Fast real-time PCR system (Thermo Fisher Scientific, USA). Subsequently, the threshold cycle (2−ΔΔCT) method was utilized to calculate relative expression of RNA, with GAPDH and U6 as the mRNA internal control and the miRNA internal control, respectively. Table 2 indicates the primer sequences used in this study.
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5

Real-Time qRT-PCR for Entamoeba Cell Analysis

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Real-time qRT-PCR was performed as previously described (48 (link)) with minor modifications. Total RNA from Entamoeba cells was extracted with RNAiso Plus (TaKaRa Bio Inc., Kyoto, Japan), and then cDNA was synthesized using the ReverTra Ace qPCR RT master mix with genomic DNA (gDNA) remover (Toyobo Co. Ltd., Osaka, Japan). Real-time PCR was performed using StepOnePlus (Thermo Fisher Scientific, Waltham, MA, USA), Thunderbird SYBR qPCR mix (Toyobo), and appropriate primer sets (see Table S3 in the supplemental material). For encysting E. invadens cell analysis, the cell pellets from one aliquot prepared for lipidomics were suspended in 1 ml RNAiso Plus (TaKaRa), and the resulting samples were similarly processed and analyzed.
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6

RNA Extraction and qPCR Analysis

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Tissues were added to liquid nitrogen to break into small particles, and then, RNAiso Plus (9109, Takara, Japan) was used for cell lysis. And cells were harvested by centrifugation, and we used RNAiso Plus (9109, Takara, Japan) to lyse cells. At last, phenol chloroform/isopropanol was used to extract total RNA from cells. After preparing the cDNA using a PrimeScript RT reagent Kit with a gDNA eraser (RR047A, Takara, Japan), 20 μL of the qPCR system was prepared and analyzed as described in the instructions of GoTaq qPCR Master Mix (A6001, Promega, USA). At last, we used the 2−ΔΔCt method to analyze the relative gene expression, and β-actin was used as the loading control. The sequences of qPCR primers are shown in Table 1.
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7

Hop-8 Modulates APOBEC3G Expression

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The stimulation effect of hop-8 was performed in PBMCs and 293T cells. PHA-stimulated PBMCs were co-cultured with DMSO or hop-8. Total cellular RNA was extracted with RNAiso Plus (Takara, Matsuyama, Japan) after treatment for 0 h, 1 h, 2 h, 4 h, 6 h, 8 h, and 12 h. 0.25 μg pcDNA3.1-APOBEC3G-HA was transfected into 293T cells. 2.7 μM and 5.4 μM hop-8, 2.7 μM prostratin and DMSO were added 4 h post transfection. Cells were lysed with RNAiso Plus when treated for 0 h, 1 h, 2 h, 4 h, 6 h, 12 h, and 24 h. The total cellular RNA was extracted and reverse transcribed into cDNA by using the PrimeScript™ RT Reagent Kit with gDNA Eraser (Perfect Real Time) (Takara). The levels of A3G mRNA were determined by real-time qPCR using a SYBR®Premix Ex Taq™ II (Tli RNaseH Plus) Kit (Takara) on a 7500 Fast Real-Time PCR System (Life Technologies). GAPDH was used as the endogenous control. The relative levels of A3G mRNA were calculated using the 2−ΔΔCt method [61 (link)]. The primers used are shown in Table S2.
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8

Evaluating circARID1A Stability and mRNA

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For circARID1A stability evaluation, SGC7901 and BGC823 cells were seeded into 12 well plates and treated with actinomycin D (5 μg/mL) (Genview, Beijing, China) for 0, 3, 6, and 9 h. Cells were lysed in RNAiso Plus (Takara, Kyoto, Japan) for RNA extraction and qRT-PCR measurements. For mRNA stability assay, SGC7901 and BGC823 cells were seeded into 12 well plates and treated with si-circARID1A or si-IGF2BP3 and then treated with actinomycin D (20 μg/mL) or vehicle for 0, 3, 6, and 9 h. Cells were lysed in RNAiso Plus (Takara) for RNA extraction and further qRT-PCR detection.
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9

Transcriptome Analysis of Docetaxel-Resistant Breast Cancer Cells

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The total mRNA of docetaxel-resistant MDA-MB-231 cells and its parental cells were collected using RNAiso Plus (9108, Takara) (3 replicates for each group), cryopreserved in drikold and subjected to Biomarker Technologies and then sequenced using Illumina platform. The total mRNA of KK-LC-1+/+ MDA-MB-231 cells and KK-LC-1−/− MDA-MB-231 cells were also collected using RNAiso Plus (9108, Takara) (3 replicates for each group), cryopreserved in drikold and subjected to Bgi Genomics Co., Ltd and then sequenced using Illumina platform.
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10

Quantifying gene expression levels in plants

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To determine the silencing efficiency, total RNA was extracted from systemically infected leaves of N. benthamiana using RNAiso plus (Takara). To detect the CP content in N. benthamiana and Eureka lemon, total RNA was extracted from infiltrated leaves at 3, 6, and 9 dpi. To evaluate the expression levels of ClRPS9‐2 in the transgenic lines, total RNA was extracted from citrus samples using RNAiso plus (Takara). cDNA was synthesized using a HiScript reverse transcriptase kit (Vazyme). RT‐qPCR was performed using BlasTap 2 × RT‐qPCR Master MIX (ABM). The housekeeping gene Actin was used as the internal control (Ananthakrishnan et al., 2010 (link)). Each experiment was performed in triplicate along with the internal control gene. The target gene content was calculated using the 2−ΔΔCt method. The primers used for RT‐qPCR are listed in Table S1.
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