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445 protocols using hematoxylin and eosin

1

Morphometric Analysis of Adipocytes and Pancreatic Islets

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The morphology of adipocytes was measured in paraffin sections of SC-WAT and RP-WAT fat pads (5μm) stained with hematoxylin and eosin (Sigma). Digital images from 50 adipocytes per animal were obtained using a light microscope (Axio observator. A1, Zeiss, Jena, Germany), at 400x magnification. After digitalization, adipocyte diameter and area were traced and calculated using a computerized morphometric analysis system (Image Pro-Plus 4.1; Media Cybernetics, Silver Spring, MD, USA). In addition, the splenic portion of pancreas included in paraffin was cut (4 μm) and stained with hematoxylin and eosin (Sigma). The images of pancreatic islets and pancreas were acquired in a digital light microscopy (Axio observator. A1, Zeiss, Jena, Germany), at 400x and 100x magnification, respectively. The pancreatic islets area (AI) and the islet/pancreas area ratio (AI/AP) were analyzed in the Image Pro-Plus 4.1 program (Media Cibernetics Inc, Rockville, USA). All analysis was done by a single observer (Boschetti D) blinded to mice identities.
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2

Nanocarrier-Mediated Drug Delivery for MRSA Treatment

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Lecithin, monostearin, soybean oil, TMP/SMZ, phosphate-buffered saline (PBS), dialysis bag (10,000 nominal-molecular-weight cutoff (NMWCO)), acetonitrile (HPLC grade), di-potassium hydrogen phosphate, ethanol (EtOH), Hanks’ balanced salt solution (HBSS), blood agar, Mueller Hinton broth (MHB), hematoxylin and eosin (H&E), mannitol, Roswell Park Memorial Institute (RPMI)-1640 medium, penicillin and streptomycin (pen/strep) antibiotics, and fetal bovine serum (FBS) were purchased from Merck (Darmstadt, Germany). 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000] (DSPE-PEG2000) was purchased from Avanti Polar Lipids (Alabaster, AL, USA). A 12-well Transwell® insert (0.4 μm pore size, 1.12 cm2 area) was purchased from Corning (Corning, NY, USA). MRSA ATCC 33591 was obtained from the culture collection of the Iranian Research Organization for Science and Technology (IROST), Tehran, Iran. Human embryonic kidney HEK 293 cells, human colon adenocarcinoma Caco-2 cells, and male Balb/c mice (6–8 weeks old) were purchased from the Pasteur Institute of Iran (Tehran, Iran).
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3

Histological scoring of brain damage

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Selected brain sections were fixed in 10% buffered formalin (Kulich, Hradec Kralove, Czech Republic), processed through conventional histological techniques, and stained with hematoxylin and eosin (both Merck, Kenilworth, NJ, USA). The histological changes were scored using a BX-51 microscope (Olympus, Tokyo, Japan) and following semi-quantitative criteria published previously [20 (link)]:

no pathology,

mild damage: 1–2 neurons with nucleus margination, chromatolysis and/or vacuolar degeneration,

moderate damage: ≥ 3 neurons with changes described in (1) and/or ≥ 1 shrunken eosinophilic neurons in 1 nucleus/subregion,

severe damage: focal damage or multiple changes described in (2) present in ≥2 nuclei/subregions and/or hemorrhage

very severe damage: diffuse damage of the region and/or multiple hemorrhages

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4

Histological Analysis of Insect Digestive System

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The digestive system of G. pyloalis fifth instar larvae after being fed on treated leaves from third instar onwards were dissected out under a stereomicroscope (Olympus Japan) in isotonic ringer saline. The dissected digestive system were immediately fixed in Buin’s fluid for 24 h. Then washed first in tap water and then distilled water. They were processed for dehydration in ethanol grades (30, 50, 70, 90% and then absolute), and the paraffin was used for embedding. The sections were cut at 5 μm thickness by a rotary microtome (Model 2030; Leica, Germany). Routine staining by hematoxylin and eosin (Merck) was used. Photos in control vs. treatments were taken whenever necessary under a light microscope (M1000 light microscope; Leica) equipped with an EOS 600D digital camera (Canon, Japan). The ovary of 2 days old adults were dissected in the similar way and processed as described for gut. However, the sections were cut longitudinally.
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5

Investigating A549 Cell Invasion Dynamics

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A549 cells were plated (1 × 106 cells) on 10-cm cell culture dishes in basal medium (10% FBS in DMEM). After 24 h, the medium was replaced with serum-free DMEM. At the same time, cells were treated with ZM at a concentration of 100 nM, 1 µM or 10 µM in individual plates. After 24, 48, and 72 h, A549 cells were reseeded (6 × 104 cells) in Matrigel and fibronectin (BD Biosciences, San Jose, CA, USA)-coated Falcon cell culture inserts with a basal medium. The invasion assay was carried out for 24 h in a tissue culture incubator. After 24 h, the cells were fixed with 4% formaldehyde dissolved in phosphate-buffered saline (PBS; Santa Cruz Biotechnology, Inc., Dallas, TX, USA). After fixing for 1 min, the chambers were rinsed once in PBS and then stained with hematoxylin and eosin (Merck, Mendota Heights, MN, USA) for 3–5 min. These cells were counted under a microscope with a 4× objective.
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6

Gut Morphometry in Broiler Chickens

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Five broilers were ethically sacrificed (cervical dislocation technique) from each experimental group on d 14 and d 28. After immediate dissection of the sacrificed broilers, carcass weight, giblet weight, abdominal fat weight, length, and weight of different gut segments were measured. Segments (1–1.5 cm in length) of the small intestine (duodenum, jejunum, and ileum) and large intestine (cecum and colorectum) were collected and flushed with phosphate-buffered saline (PBS) to wash out the digesta. Collection site for each segment: Duodenum–from the midpoint of the ascending loop; Jejunum–from the mid-region between the entrance of the bile duct and Meckel's diverticulum (MD); Ileum–from the midpoint between the MD and ileocecal junction; Cecum–from the blind end of the right cecum; Colorectum–from the midpoint between the ceco-colic junction and rectal opening.
Intestinal segments were fixed in neutral-buffered formalin (10%) for histological study. Tissue samples were then dehydrated using rising grades of ethanol (Merk, Damstadt, Germany), cleared using xylene (Merck, Damstadt, Germany), and paraffin-embedded. Five micrometer thin tissue sections were cut from the paraffin-embedded gut tissues and finally, Hematoxylin and Eosin staining (Merck, Damstadt, Germany) was performed for histomorphometric investigation.
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7

Immunohistochemical Analysis of Skin Grafts

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The skin grafts were fixed in 4% paraformaldehyde and embedded in paraffin. The blocks were sliced into 5-µm sections and stained with anti-mouse CD3ε (A0452, Dako, Glostrup, Denmark) or anti-mouse Iba-1 (019-19741, Wako, Osaka, Japan) as the primary antibody, and then with anti-rabbit IgG-horse radish peroxidase (K4003, Dako) as a secondary antibody. Antibody binding was detected with a chromogenic substrate for horseradish peroxidase. The samples were counter stained with hematoxylin and eosin or Kernechtrot (Merck Millipore, Billerica, MA, USA).
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8

Histological Analysis of Gonad Tissue in Sterile and Fertile Salmon

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Formalin‐fixed gonad tissues from sterile and fertile males and females (n = 6–10 per group) were processed overnight in Tissue Processor (Logos; Milestone). Paraffin embedded tissues were sectioned (2 μm) using a rotary microtome (Leica) and stained with hematoxylin and eosin (Merck) in auto‐stainer (Leica) at the Norwegian Veterinary Institute, Harstad. All slides were then analyzed at Nofima, Tromsø, using light microscopy and the QuPath (Quantitative Pathology & Bioimage Analysis) software. Germ cells were detected by immunohistochemical analysis of a subset of gonads using polyclonal rabbit antibodies against Atlantic salmon Vasa (Škugor et al., 2016 (link)) as primary antibodies and the ImmPRESS polymerized reporter enzyme staining system (Vector) with horseradish peroxidase anti‐rabbit immunoglobulin G as secondary antibody according to manufacturer's protocol. Sections treated without the primary antibody were used as negative controls.
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9

Ovarian Follicle Morphology Assessment

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All the ovaries (n=154) were fixed with 4% paraformaldehyde, embedded in a paraffin block and serially sectioned at a thickness of 4 µm. Only one section was obtained from each ovary. Some of the paraffin section slides (n=77) were stained with hematoxylin and eosin (Merck, Darmstadt, Germany) and observed under light microscopy (Nikon, Tokyo, Japan) at ×400 magnification. The follicles were assessed and counted if they included an oocyte. The follicle stage was assessed as primordial, primary, secondary, or antral according to previous guidelines [20 (link)]. As shown in Figure 1, the morphological integrity of each follicle was evaluated using the following criteria, with grade 1 considered the most intact form, as previously reported [21 (link)].
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10

Histopathological Evaluation of Corneal Irritation

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For histopathological evaluation by light microscopy, the corneas were fixed in 10 % neutral buffered formalin for at least 24 h and trimmed along the whole diameter (2 stripes of 3–4 mm width). They were histotechnically processed with a standard method for light microscopy and stained with Hematoxylin and Eosin (Merck KGaA, Germany). Histopathological findings were assessed in the epithelium based on the depth of injury by using a standard semi-quantitative grading system (from 1 to 5) that is related to the extent of affected cell layers beginning from the corneal surface (squamous cell layer) down to the basal cell layer. This depth of the injury has been proposed as a predictor of the severity and reversibility of effects [41 –43 (link)] and has been taken up in an OECD guidance document related to the BCOP assay [44 ]. In the stroma, tissue swelling and keratocyte changes were evaluated. These findings were summarized in a so-called Histopathological Score of Irritation (HSI) assigned for each cornea ranging from 0 = no irritation to IV = severe irritation (cf. Kolle et al. [45 (link)] for further details). HSI IV was assessed as ‘severe irritation’; HSI I, II and III were overall assessed as ‘non-severe irritation’; HSI 0 was regarded as no irritation.
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