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Rabbit anti caspase 3

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Rabbit anti-caspase 3 is a primary antibody that specifically binds to caspase-3, a key enzyme involved in the process of apoptosis (programmed cell death). This antibody is commonly used in research applications that require the detection and analysis of caspase-3 expression or activation.

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11 protocols using rabbit anti caspase 3

1

Apoptosis Detection in NSCs

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At 24 hours post-ejection, NSCs seeded on coverslips (as per above) were fixed with 4% paraformaldehyde and assayed for apoptosis using immunohistochemistry. A primary antibody consisting of a rabbit anti-Caspase-3 (1:50; Millipore; AB3623) in PBS + 0.1% Triton X-100 was incubated with cells overnight at 4 °C followed by a goat anti-rabbit IgG Alexa Fluor 555 (1:500; ThermoFisher) secondary antibody for 1 hour at room temperature. To visualize individual nuclei for cell counting, Hoechst 33342 (1 μg/mL; Sigma) was applied as a counterstain for 5 min prior to placing the coverslip on a microscopic slide using Vectashield for fluorescence (ThermoFisher). Using a Zeiss AxioImager M2 Fluorescence Microscope, fifteen randomly chosen images (20x magnification) were acquired. For each condition, 45 images were analyzed using Fiji version 1.49 (https://fiji.sc).
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2

Caspase-3 Positive Cells Quantification

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Flow cytometry acquisition was used to determine the percentage of Caspase-3 positive cells according to Ref. [37 (link)]. Jurkat cells were treated according to the above-mentioned procedures. The fixated Jurkat cells were washed and incubated with rabbit anti-Caspase-3 (Millipore, cat #AB3623) primary antibody (1:200) at 4 °C overnight. Cell suspensions were washed and incubated with DyLight 488 donkey anti-rabbit antibody (1:500). Finally, cells were washed and re-suspended in PBS for analysis on a BD LSRFortessa II flow cytometer (BD Biosciences). Twenty thousand events were acquired, and the acquisition analysis was performed using FlowJo 7.6.2 Data Analysis Software.
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3

Immunohistochemical Analysis of Apoptosis and NF-κB

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Five-micrometer tissue sections were deparaffinized in xylene, rehydrated in an ethanol series, and submitted to antigen retrieval step. The sodium citrate buffer (10 mM sodium citrate, 0.05% Tween 20, pH 6.0) was used for heat-induced epitope retrieval. After 15 min of antigen retrieval step, the sections were blocked for nonspecific binding with 5% bovine serum albumin (Sigma-Aldrich, St. Louis, MO, USA) for 1 h at room temperature and incubated with the primary antibodies for 18 h at 4°C. These sections were washed with PBS three times and then were incubated with primary antibodies, including rabbit anti-Caspase 3 (1:100; Chemicon), rabbit anti-PARP (1:100, Promega), and rabbit anti-NF-κB (1:100; R&D Systems, Minneapolis, MN, USA).
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4

Immunohistochemical Analysis of Apoptosis and NF-κB

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Five-micrometer tissue sections were deparaffinized in xylene, rehydrated in an ethanol series, and submitted to antigen retrieval step. The sodium citrate buffer (10 mM sodium citrate, 0.05% Tween 20, pH 6.0) was used for heat-induced epitope retrieval. After 15 min of antigen retrieval step, the sections were blocked for nonspecific binding with 5% bovine serum albumin (Sigma-Aldrich, St. Louis, MO, USA) for 1 h at room temperature and incubated with the primary antibodies for 18 h at 4°C. These sections were washed with PBS three times and then were incubated with primary antibodies, including rabbit anti-Caspase 3 (1:100; Chemicon), rabbit anti-PARP (1:100, Promega), and rabbit anti-NF-κB (1:100; R&D Systems, Minneapolis, MN, USA).
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5

Protein Isolation and Immunoblotting Assay

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The total protein was isolated from liver tissues using RIPA buffer (Sigma-Aldrich, St. Louis, US). Ten micrograms of total protein was loaded per well and then separated on 12% sodium dodecyl sulfate-polyacrylamide gel. Then, the protein was transferred onto the polyvinylidene difluoride membrane (GE Healthcare, Buckinghamshire, United Kingdom). The membrane was blocked with 5% BSA in TBST (0.5% Tween 20) for 1 h at room temperature. The membrane was incubated at 4°C overnight with primary antibodies: rabbit anti-phospho-AKT (Ser473, 1 : 1000), rabbit anti-phospho-Stat3 (Tyr705, 1 : 2000), rabbit anti-phospho-NF-κB p65 (Ser536, 1 : 1000), rabbit anti-AKT (1 : 1000), rabbit anti-Stat3 (1 : 2000), anti-NF-κB p65 (1 : 1000), rabbit anti-caspase 3 (1 : 1000), and rabbit anti-GAPDH (1 : 20000, Sigma-Aldrich, St. Louis, USA). All antibodies besides rabbit anti-GAPDH were purchased from Cell Signaling Technology, Beverly, USA. The membrane was incubated for 1 h at room temperature with a goat polyclonal to rabbit IgG antibody (1 : 10000, Abcam) and developed with the SuperSignal West Femto Trial kit (Thermo, USA). The membrane was exposed to high-sensitivity films (GE Healthcare) for autoradiography.
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6

Hippocampus Protein Expression Analysis

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Total proteins were extracted from the hippocampus tissues, and protein concentration was assessed by the bicinchoninic acid (BCA) reagent (Thermo Fisher, Waltham, MA, USA) method. Equal amounts of protein were subjected to SDS-polyacrylamide gel electrophoresis. Separated proteins were transferred from the gel onto PVDF membranes (Bio-Rad, Hercules, CA, USA) by a transfer apparatus. The membrane was blocked with 5% fat-free dry milk for 2 h at room temperature. Subsequently, blots were incubated overnight at 4°C with indicated primary antibodies, including rabbit anti-caspase-3 (Sigma, St. Louis, MO, USA, 1 : 1000), rabbit anti-Bax (Sigma, 1 : 1000), rabbit anti-Bcl-2 (Sigma, 1 : 500) and rabbit anti-β-actin (Sigma, 1 : 1000). The membranes were then incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (Sigma, 1 : 5000) for 2 h at 37°C. Finally, immunoreactive bands of the protein expression level were normalized to the intensity of the corresponding bands for β-actin. Densitometric analysis of the results was performed with Image J 1.41 software (National Institutes of Health, Bethesda, MD, USA).
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7

Western Blot Analysis of Apoptosis Markers

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Western blots were performed as described [34 (link)]. Briefly, proteins were separated by gel electrophoresis, transferred to the Hybond-P PVDF membrane, blocked with 2% milk in PBST, incubated with primary and HRP secondary antibodies, treated with luminol substrate and developed on a film. Mouse monoclonal anti-caspase 8 (Sigma-Aldrich), mouse monoclonal anti-caspase 9 (Sigma-Aldrich), rabbit anti-caspase 3 (Sigma-Aldrich), rat monoclonal anti-caspase 12 (Sigma-Aldrich) and rabbit polyclonal antibody against Bim (amino acids 4–195 of BimEL form) were all used at a 1:1000 dilution for Western blots.
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8

Molecular Profiling of TRAF3IP2 Signaling

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Rabbit-anti-TRAF3IP2, rabbit-anti-Cleaved-Caspase 3, rabbit-anti-Caspase 3, rabbit-anti-Bax and rabbit-anti-β-actin antibodies were purchased from Sigma-Aldrich (USA). The TRAF3IP2 siRNA (siTRAF3IP2) and scramble siRNA (siNC) were purchased from Thermo Scientific Open Biosysterms and were cloned into the lentiviral vector GV248 (Jikai, Shanghai, China).
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9

Western Blot Analysis of Apoptosis Markers

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Western blots were performed as described [38] (link). Mouse monoclonal anti-Caspase 8 (Sigma), mouse monoclonal anti-Caspase 9 (Sigma), rabbit anti-Caspase 3 (Sigma), rat monoclonal anti-Caspase 12 (Sigma), rabbit polyclonal antibody against Bim (amino acids 4–195 of BimEL form), rabbit anti-Cytochrome C (Cell Signaling), goat polyconal anti-HP1 (Santa Cruz), rabbit anti-CoxIV (Cell Signaling), rabbit anti-phospho-JNK (Thr183/Tyr185) (81E11) (Cell Signaling), rabbit anti-JNK (Cell Signaling), mouse monoclonal anti-CHOP (L63F7) (Cell Signaling), rabbit anti-Apaf-1 (Cell Signaling), rabbit anti-Bcl2 (Cell Signaling), rabbit polyclonal anti-ATF-6 (Santa Cruz), rabbit anti-Bax (Cell Signaling) were all used at a 1:1000 dilution for western blots.
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10

Proteasome and Apoptosis Regulation in Tissues

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Total protein was extracted from tissues to detect the levels of caspase-3, 19S proteasome, 20S proteasome and ubiquitin ligase E3 in target tissue via western blotting. The proteins were separated via 12% SDS-PAGE, blotted and probed with rabbit anti-caspase-3 (1:500; Sigma-Aldrich; Merck KGaA; cat. no. C8487), rabbit anti-19S proteasome (1:1,000; Enzo Life Sciences; cat. no. Q9SEI2), rabbit anti-20S proteasome (1:1,000; Abcam; cat. no. ab22673) and rabbit anti-enzyme E3 (1:1,000; Abcam; cat. no. ab84067). A Bradford assay (Bio-Rad Laboratories, Inc.) was used to quantify protein concentrations. The blots were visualized using a chemiluminescence system (Amersham Bioscience; GE Healthcare).
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