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27 protocols using epr3776

1

Western Blotting for Vimentin Expression

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Differences in vimentin expression between samples were assayed using anti-vimentin rabbit monoclonal antibody (EPR3776, Abcam) and anti-rabbit IgG HRP-conjugated antibody (NA 934, Amersham Biosciences) at 1:5,000 or 1:10,000 dilution in TBS, respectively. 30 μg of whole-cell protein extracts from each treatment were separated using SDS-PAGE and transferred to nitrocellulose membranes by wet electroblotting, as described previously [14 ]. Non-specific binding sites were blocked with 5 % fat-free milk powder in TBS (pH 7.4) for 3 h. The membranes were incubated with 1:5,000 TBS-dilution of primary anti-vimentin rabbit monoclonal antibody (EPR3776, Abcam) overnight at 4 °C, then washed with TBS for 10 min three times, incubated with 1:10,000 TBS dilution of secondary anti-rabbit IgG HRP-conjugated antibody (NA 934, Amersham Biosciences) for 2 h at room temperature, and washed with TBS for 10 min three times.
Signals were visualized using the ECL chemiluminescence system (ab5801, Abcam) and detected on film (CL-XPosure Film, Thermo Scientific) using the exposition time that generated the best signal. Protein molecular weight was determined using PageRuler Plus Prestained Protein Ladder (Thermo Scientific) and assigned using Quantity One software 4.6. (BioRad). Densitometric quantifications were performed in triplicate using Quantity One software.
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2

Antibodies and Inhibitors in Cell Research

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The antibodies used were as follows: rabbit antibody against human E-cadherin (24E10; Cell Signaling Technology, Danvers, MA, United States); rabbit antibody against human N-cadherin (GTX127345; GENETEX, Inc., Irvine, CA, United States); rabbit antibody against human vimentin (EPR3776; Abcam, Cambridge, United Kingdom); rabbit antibody against human β-actin (4967; Bioss Antibodies, Woburn, MA, United States); and HRP-conjugated secondary antibody against rabbit IgG (7074; Cell Signaling Technology). The inhibitors used were as follows: deferoxamine (DFO; D9533; Sigma-Aldrich, St. Louis, MO, United States), ferrostatin-1 (SML0583; Sigma-Aldrich), and MitoQ (B1309; Biovision, Milpitas, CA, United States).
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3

Proximity Mapping of Cytoskeletal Filaments

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Proximities between actin and vimentin or nestin filaments were examined by Duolink in situ Proximity ligation assay (PLA) (Sigma-Aldrich). Cells were cultured and fixed with 4% paraformaldehyde for 15 min. After permeabilization with cold acetone for 1 min, the cells were washed with a blocking solution containing 0.4% Block Ace (DS Pharma Biomedical) in PBS, incubated with mouse monoclonal anti-actin antibodies (1:400) (AC-40, Sigma-Aldrich, St. Louis, MO, USA) and rabbit monoclonal anti-vimentin (1:500) (EPR3776, Abcam, Cambridge, UK) or rabbit monoclonal anti-nestin antibodies (1:1000) (SAB4200347, Sigma-Aldrich, St. Louis, MO, USA) diluted in 0.4% Block Ace for 1 h at room temperature. All other steps were performed according to manufacturer's instructions. To evaluate the number of signals from each PLA reaction, fluorescence spots on the basal membranes of 30 cells were counted.
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4

Immunohistochemistry and Western Blot Analysis of Neuroinflammatory Markers

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Antibodies for immunohistochemistry to detect Iba1 (goat polyclonal; catalog number ab5976), vimentin (rabbit monoclonal; clone EPR3776; catalog number ab92547), and CD68 (rabbit polyclonal; catalog number ab125212) were from Abcam (Cambridge, UK), that for detecting glial fibrillary acidic protein (GFAP; rabbit polyclonal; catalog number G4546) was from Sigma-Aldrich (St Louis, Mo) and for NeuN (mouse monoclonal; clone A60; catalog number MAB377) was from Millipore-Chemicon (Merck, Darmstadt, Germany). Alexa-fluor-conjugated secondary antibodies were from Thermo Fisher Scientific (Waltham, MA, USA). For additional analysis of morphological changes in Iba1-immunolabeled cells, the antibody to detect Iba1 was from Wako Pure Chemical (Osaka, Japan; catalog #019-19741) and the biotinylated secondary antibody was from Jackson ImmunoResearch (West Grove, PA, USA; catalog #711-005-152).
For Western blot analysis, antibodies to detect GFAP (rabbit polyclonal; catalog number G3893) and actin (rabbit polyclonal; catalog number A2066) were from Sigma-Aldrich; those for vimentin (rabbit monoclonal; catalog number ab92547) were from Abcam and for neurocan (mouse monoclonal; clone 650.24; catalog number MAB5212) were from Millipore-Chemicon. A peroxidase donkey anti-rabbit IgG (catalog number: 711-035-712) from Jackson ImmunoResearch was used as secondary antibody.
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5

Histological Analysis of Vimentin Expression

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Tissues were fixed in 10% neutral buffered formalin before embedding into paraffin and cutting 5μm sections. Deparaffinization and antigen retrieval was performed as previously described (Bardina et al., 2017 (link)). Slides were stained with hematoxylin (Gill’s formula, Vector Laboratories H3401) and eosin Y (Sigma Aldrich E4009) according to manufacturer’s instructions. For vimentin staining, slides were blocked in TBST containing 2.5% normal goat serum for 40 minutes at RT, washed and incubated with rabbit monoclonal anti-vimentin antibody (1:1000, clone EPR3776, Abcam) for 1 hour at 4°C, then washed and incubated with goat anti-rabbit Alexa Fluor 488 before mounting with Vectashield as described above and imaging with an AxioImager Z2 microscope (Zeiss) and Zen 2012 software.
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6

Immunofluorescent Dual Staining of Smooth Muscle and Vimentin

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Deparaffinized sections were autoclaved at 120°C for 20 min in antigen retrieval solution (Nichirei Biosciences Inc.) and then allowed to cool. Sections were incubated with 1% skim milk for 1 hour at room temperature. For double staining, anti-smooth muscle actin antibodies (1A4, dilution 1:1,000, mouse monoclonal, Dako) and anti-vimentin antibodies (EPR3776, dilution 1:400, rabbit monoclonal, Abcam) were simultaneously added to the slides and incubated for 1 hour at room temperature. After washing the slides with PBS, fluorescein-labeled goat anti mouse IgG (Life Technologies Corporation.) and tetramethylrhodamine-labeled goat anti-rabbit IgG (Life Technologies Corporation.) were added followed by incubation at room temperature for 1 hour. After washing the slides with PBS, the sections were mounted with Vectashield containing DAPI (Vector Laboratories) and subjected to fluorescence microscopy.
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7

Immunohistochemical Profiling of Skin Markers

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The following primary antibodies were used: mouse monoclonal anti‐IL‐38 (H127C, eBioscience), polyclonal goat anti‐IL38 antibody (AF2427, R&D Systems), rabbit monoclonal anti‐loricrin (EPR7148(2)(B), Abcam), rabbit monoclonal anti‐keratin 7 (EPR17078, Abcam), rabbit monoclonal anti‐keratin 10 (EP1607IHCY, Abcam), rabbit monoclonal anti‐keratin 14 (LL002, Bio SB), rabbit monoclonal anti‐vimentin (EPR3776, Abcam), rabbit monoclonal anti‐carbonic anhydrase 2/CA2 (EPR5195, Abcam), mouse IgG2b kappa monoclonal isotype control (AB18421, Abcam), mouse monoclonal anti‐YAP (63.7, sc‐101 199, Santa Cruz), rabbit monoclonal anti‐ID1 (195–14, Biocheck), mouse monoclonal anti‐alpha tubulin (DM1A, Abcam).
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8

Western Blot Analysis of Liver Cancer Markers

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FU97 cell lysates were extracted using RIPA Lysis Buffer containing protease and phosphatase inhibitors (Beyotime), fractionated by SDS‐polyacrylamide gel electrophoresis, and electrotransferred to polyvinylidene difluoride (PVDF) membranes. After blocking in 5% skim milk in triethanolamine buffered saline with 1‰ Tween‐20 (TBST) for 1 h at room temperature, the membranes were incubated with primary antibodies (AFP [1:2500, Abcam, EPR20667], GPC3 [1:1000, HUABIO, EM1709‐60], ALB [1:500, HUABIO, ET1702‐55], E‐cadherin [1:10000, Abcam, EP700Y], N‐cadherin [1:5000, Abcam, EPR1791‐4], VIM [1:1000, Abcam, EPR3776], SNAIL [1:1000, Abcam, EPR21043], and GAPDH [1:5000, Abcam, EPR16891]) at 4°C overnight and then with peroxidase‐conjugated secondary antibodies (HRP Conjugated Goat Anti‐Rabbit IgG [1:5000, HUABIO]) for 1 h at room temperature. After washing thrice with TBST, the blot was soaked in Super ECL Detection Reagent (YEASEN) for 10 s. The membranes were then exposed to a film (Kodak) for 10 s in the dark.
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9

Immunofluorescence Analysis of Lung Tissues

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Cells were cultured in the glass Petri dishes and the paraffin section was performed on the lung tissues of mice. The cells were fixed with 4% paraformaldehyde for 15 min. The samples were permeabilized with Triton x-100 for 30 min. After washing with cold PBS, the samples were blocked with 3% bovine serum albumin (BSA) for 1 h at room temperature, and incubated with the primary antibodies including anti-CFTR (sc-376683, 1:200, Santa Cruz Biotechnology), anti-phospho-SGK1 (36-002, 1:200, Millipore), anti-SARS-CoV-2 N protein (ab271180, rabbit mAb, 1:500, Abcam), anti-SARS-CoV-2 N protein (33717, mouse mAb, 1:400, CST), anti-Smad3 (9523, 1:100, CST), anti-pan-Keratin (4545, 1:500, CST), anti-Vimentin (EPR3776, 1:500, Abcam), anti-F4/80 (D4C8V) (30325, 1:500, CST), and anti-β IV Tubulin (bs-20694R, 1:200, Bioss, China) at 4 °C overnight. The samples were washed with PBS and incubated with the fluorescence-labeled secondary antibodies including Donkey anti-Rabbit IgG (A10042, Invitrogen) and Donkey anti-Mouse IgG (A21202, Invitrogen) at room temperature for 1 h. Finally, DAPI (C0060, Solarbio, China) was added to label the cell nuclei at room temperature for 5 min. The fluorescence was recorded by using a confocal imaging system (TCS SP8 STED 3X, Leica).
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10

Immunophenotyping of Gingival Mesenchymal Stem Cells

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Following fixation with 4% paraformaldehyde, the GMSCs were permeabilized with methanol and blocked with 5% BSA in PBS for 20 min. Subsequently, the GMSCs were immunolabeled with antibodies against CD90 (rabbit anti-human monoclonal antibody, 1:100, EPR313, Abcam) S100A4 (rabbit anti-human monoclonal antibody, 1:200, EPR2761(2 (link)), Abcam), vimentin (rabbit anti-human monoclonal antibody, 1:100, EPR3776, Abcam) and cytokeratin (mouse anti-human monoclonal antibody, 1:100, AM10031PU-S, OriGene Technologies, Inc.). Following incubation, the cells were washed with PBS, incubated with fluorescein isothiocyanate-conjugated secondary antibody and counterstained with DAPI. The samples were observed under a fluorescence microscope (Olympus Corporation).
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