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119 protocols using ionomycin

1

Activation of Frozen Immune Cells

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Frozen perfusate cells were thawed, washed and incubated in RPMI + 10% FCS in the presence of 10 U/ml DNAse (Roche) for 45 min at 37 °C. After washing, cells were cultured with either 5 ng/ml IL-12 and 50 ng/ml IL-18 (both R&D), 3 ng/ml PMA and 100 ng/ml Ionomycin (both Sigma, low PMA+Ionomycin) or 25 ng/ml PMA and 1 μg/ml Ionomycin for 4 h at 37 C. Anti-CD107a-APC (clone H4A3, BD Bioscience) was present during culture. Brefeldin A (Sigma) and Monensin (BD Bioscience) were added for the last 3 h of stimulation.
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2

Flow Cytometry for T Cell Phenotyping

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Antibodies for FACS were purchased from ThermoFisher eBioscience: Anti-CD4 mAbs, clone: RM4-5; Anti-CD25 mAbs, clone: PC61.5; Anti-CD69 mAbs, clone: H1.2F3; Anti-CD44 mAbs, clone: IM7; Anti-IL-4 mAbs, clone: 11B11; Anti-IFN-g mAbs, clone: XMG1.2; Anti-FoxP3 mAbs, clone: FJK-16S. Intranuclear staining was carried out using the Fixation/Permeabilization buffer solution (eBioscience) according to manufacturer’s instruction. For intracellular cytokine staining, cells were stimulated with PMA (50 ng/ml), Ionomycin (250 ng/ml) and Golgi-Plug (1:1000 dilution, BD PharMingen) at 37°C for 3 hr, followed by fixation with the Fixation/Permeabilization buffer solution (BD Biosciences) according to manufacturer’s instruction. Stained cells were analyzed on a LSRFortessa (BD Biosciences) and data was analyzed with FlowJo software.
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3

Effector T Cell Transfer in Rag1-/- Mice

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Rag1-/- mice were injected i.p. with 3x105 WT or Plac8-/- naïve CD4+CD25-CD45RBhi effector T cells. Mice were weighed prior to adoptive transfer and weekly thereafter until significant weight loss was observed in the WT control group. Splenic, mesenteric lymph node (mLN)-derived and lamina propria (LPL) lymphocytes were isolated. Cells were resuspended to 1x106 cells/mL before ex vivo stimulation with 50 ng/mL PMA, 0.5 μg/mL ionomycin, and Golgi transport inhibitor according to the manufacturer’s directions (BD Biosciences) for 4 h at 37°C. Cells were surface stained for CD4 (RM4-5) and TCRβ (H57-597) prior to fixation in 4% formalin (Protocol), resuspension in BD Perm/Wash (San Jose, CA), and intracellular staining with monoclonal antibodies reactive to IFNγ (XMG1.2), TNF (MP6-XT22), and IL-17A (eBio1787). Samples were run on the BD LSRII flow cytometer, and data analysis was performed using FlowJo software.
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4

Multiparametric Flow Cytometry Analysis

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Surface staining was performed on PLN cells incubated with 10% rabbit serum to block non-specific binding for 20 min and then incubated with anti-CD3, CD4, CD8, CD11c, B220, MHC-II, CD86, PD-L1, CD25, CD69, and CCR4 conjugated to the following fluorochromes: PE, PE-Cy7, FITC, APC, APC-Cy7 or PerCP. For the Foxp3 staining, the cells were fixed and permeabilized using the BD Pharmingen mouse Foxp3 buffer set (BD Bioscience, San Diego, CA, USA) and then incubated with anti-Foxp3 antibody conjugated to PE for 30 min. For the intracellular cytokine staining, PLN cells were incubated with PMA (500 μg/ml), ionomycin (50 μg/ml), and GolgiStop (BD Biosciences, San Diego, CA, USA) for 6 h at 37 °C. Extracellular staining was performed, followed by fixation and permeabilization using the Cytofix/Cytoperm kit (BD Bioscience, San Diego, CA, USA). Anti-IFN-γ and IL-17 antibodies conjugated to PE or APC were added to the cell suspension and incubated for 30 min. The cells were acquired on a flow cytometer (FACS CantoII; BD Biosciences). Data analysis was performed using FlowJo software (Tree Star, Ashland, OR).
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5

Isolation and Flow Cytometric Analysis of Tumor-Infiltrating Cells

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KEP tumors were collected in ice-cold PBS and processed as described61 (link). Briefly, samples were mechanically chopped using the McIlwain tissue chopper (Mickle Laboratory Engineering) and enzymatically digested with 3 mg/ml collagenase type A (Roche) and 25μg/ml of DNase I (Sigma) in serum-free medium for 1h at 37°C in a shaking water bath. After washing, cells were stained with fluorochrome-conjugated antibodies (Supplementary Table 1). For intracellular staining of granzyme B, single-cell suspensions were stimulated in IMDM containing 8% FCS, 100 IU/ml penicillin, 100 μg/ml streptomycin, 0.5% β-mercaptoethanol, 50 ng/ml PMA, 1 μM ionomycin and Golgi-Plug (1:1000; BD Biosciences) for 3 h at 37 °C. Following surface antigen staining, samples were fixed and permeabilized (BD Biosciences) and stained for intracellular proteins. Data acquisition was performed on BD LSRII or BD LSRFortessa flow cytometer using Diva software (BD Biosciences) and data analysis was performed using FlowJo software version 9.9.6.
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6

Quantifying Th1 and Th2 Cytokine Production

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Whole blood (1 mL) was mixed with 1 mL of either non-activating medium [10% fetal calf serum (FCS)-supplemented RPMI 1640 with 4 μL/mL GolgiStop (BD Biosciences, Franklin Lake, NJ)] or activating medium [non-activating medium with 50 ng/mL phorbol myristate acetate (PMA) and 5 μg/mL ionomycin (BD Biosciences, Franklin Lake, NJ)], and incubated at 37°C in an atmosphere with 5% CO2 for 5 hours. After washing with PBS, the cells were collected by centrifugation and adjusted to 5 × 105 white blood cells per test, and stained with PECy5-labeled anti-human CD4 monoclonal antibody (BD Biosciences, Franklin Lake, NJ). Cell fixation and permeabilization were performed with FACSTM Perm 2 (BD Biosciences), according to the manufacturer's instructions. Intracellular cytokines were stained with FITC-labeled anti-human IFN-γ and PE-labeled anti-human IL-4 monoclonal antibodies (BD Biosciences). IFN-γ- and IL-4-producing CD4+ T cells were analyzed on a FACS Calibur (BD Biosciences). Nonspecific staining with an isotype-matched control monoclonal antibody was <1%.
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7

Differentiation and Analysis of Human Th17 Cells

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CD4+ T cells were isolated from human peripheral blood using the Dynabeads™ Untouched™ Human CD4 T Cells Kit (ThermoFisher Scientific), according to the manufacturer’s protocol. Purity of the obtained CD4+ T cell population was analysed by flow cytometry (Donor 1: 93%; Donor 2: 94%). Next, CD4+ T cells were cultured at a density of 0.5×106 cells/mL in RPMI medium containing 10% HS, anti-CD3/CD28 beads (2:1 bead to T cell ratio), 10 ng/mL IL-6 (R&D Systems), 10 ng/mL IL-1ß (R&D Systems), 10 ng/mL TGF-ß1 (R&D Systems), 10 ng/mL IL-23 (R&D Systems), 10 μg/mL anti-IL-4 (MP4-25D2, BD Biosciences), and 10 μg/mL anti-IFNγ (B27, BD Biosciences) (“Th17 differentiation medium”). Medium was refreshed every 2-3 days and cells were split at day 4 and 7. On day 7 and 10, cells were harvested and re-stimulated with 50 ng/mL Phorbol 12-myristate 13-acetate (PMA) (BD Biosciences) and 1 μg/mL ionomycin (BD Biosciences) in the presence of 1 μL/mL Brefeldin A for 5 hours, at 37 °C and 5% CO2. Next, cells were harvested and stained using the indicated antibodies, and the percentage of IL17A+ cells was quantified by flow cytometry.
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8

Multicolor Flow Cytometry Analysis

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The mouse spleens were digested with 1 mg/mL collagenase I (Gibco) in Hank’s balanced salt solution (HBSS; Life Technologies) and stained. The bone marrow (BM) was prepared from femur and BD Pharm Lyse (BD Biosciences) was added to lyse red blood cells. TruStain FcX antibody (BioLegend, San Diego, CA) was applied to block non-specific binding for 10 min at 4 °C in FACS buffer (Ca2+/Mg2+-free PBS with 1% human bovine serum albumin, 4% FBS, and 0.5 M EDTA) before staining (30 min) with appropriate antibodies. For intracellular staining, SVCs isolated from epididymal white adipose tissue (eWAT) were stimulated for 5 h at 37 °C with PMA, ionomycin, and GolgiStop (BD). Stimulated cells were washed with PBS, fixed, and permeabilized by Cytofix/Cytoperm kit (BD) as per the manufacturer’s protocol. Abs were purchased from BioLegend or R&D Systems: For mouse, CD45R/B220 (30-F11), F4/80 (BM8), Ly-6C (HK1.4), Ly-6G (1A8), CD3 (17A2), CCR7 (4B12), CD8a (53-6.7), CD11b (FAB1124S), CD4 (FAB554S), DARC (FAB6695A), CD206 (C068C2), IL-22Ra1 (FAB42941P), IL-22 (Poly5164), and IL-10 (JES5-16E3); for human, CD4 (RPA-T4), CD8 (SK1), CD14 (63D3), CD11b (ICRF44), CD16 (3G8), DARC (Clone #358307), IL-22Ra1 (Clone #305405), CD86 (IT2.2), and CD206 (15-2). Isotype control forward- and side-scatter parameters were used to remove the cell aggregates and debris.
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9

Cytokine Profiling of Activated CD4 T-cells

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To ascertain cytokines in CD4 T-cells, co-cultures were treated with phorbol-12-myristat-13-acetat (PMA) (2 μg/ml)/Ionomycin (1 μM, both Sigma-Aldrich, Munich, Germany) for 4 h on day 6 of co-culture. Intracellular staining was performed as indicated above. For measurement of secreted cytokines on day 6 of co-culture, DN T-cells and CD4 T-cells were separated using anti-CD4+ magnetic beads (Miltenyi Biotec, Bergisch-Gladbach, Germany). Purity was confirmed with flow cytometry (>95%). CD4 T-cells were stimulated with PMA/Ionomycin, supernatants were collected after 6 h and analyzed simultaneously for IL-2, IL-4, IL-6, IL-10, IL-17A, TNF, and IFN-γ secretion using the human Th1/Th2/Th17 cytokine cytometric bead array kit (BD Biosciences, Heidelberg, Germany).
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10

Flow Cytometric Analysis of Immune Cells

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The following monoclonal antibodies were used for flow cytometric analysis of immune cells: anti-mouse CD4 (BD Pharmingen, Cat. 553088), anti-mouse IFN-γ (BD Pharmingen, Cat. 560660), anti-mouse IL-4 (BD Pharmingen, Cat. 560699), IL-17a (BD Pharmingen, Cat. 561020), CD8 (Biolegend, Cat. 100744), B220 (BD Pharmingen, Cat. 563894), CD11c (BD Pharmingen, Cat. 746392), CXCR5 (Biolegend, Cat. 560617), CD138 (BD Pharmingen, Cat. 568626), IgD (BD Pharmingen, Cat. 553510), CD19 (Biolegend, Cat. 115530), CD45 (BD Pharmingen, Cat. 560510), CD11b (BD Pharmingen, Cat. 564454), and Gr-1 (Biolegend, Cat. 108410). For cytokine analysis, cells were stimulated in RPMI 1640 medium (Gibco) supplemented with 10% fetal bovine serum (FBS, HyClone), PMA, ionomycin, and GolgiPlug (BD Biosciences, Cat. 550583) at 37°C and 5% CO2 for 6 h. For intracellular staining, cells were fixed and permeabilized with a Human Foxp3 Buffer Set (BD Biosciences, Cat. 562574) or Cytofix/Cytoperm (BD Biosciences, 554722) according to the manufacturer’s instructions.
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