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Diamond knife

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The Diamond Knife is a specialized tool used in electron microscopy for sectioning and trimming samples. It features a sharp, durable diamond edge designed to create ultra-thin sections of materials for analysis under the microscope. The Diamond Knife is intended for precise and controlled sample preparation.

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300 protocols using diamond knife

1

Ultrastructural Analysis of Mouse Hippocampus

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Mouse hippocampus were isolated and fixed in 2.5% glutaraldehyde (Sigma-Aldrich, G6257) at 4°C overnight. The samples were washed in 0.1M sodium cacodylate buffer and post-fixed in 1% OsO4 at R.T. for 2 hours. The tissues were dehydrated in ethanol with increasing concentrations, followed by infiltration in epoxy resin/propylene oxide (1:1) at 37°C overnight. Tissues were embedded in epoxy resin at 60°C overnight. Ultra-thin sections were cut with a diamond knife (Diatome) and placed onto copper grids followed by staining with silver citrate. Images were captured by a Philips CM100 transmission electron microscope.
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2

Mouse Backskin Tissue Preparation

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Mouse backskin was spread on whatman paper and immersion fixed in 2% formaldehyde, 2% glutaraldehyde in 0,1 M sodium cacodylate buffer (Applichem) for 48 h at 4 °C.
For epon embedding, fixed tissue was washed with 0,1 M sodium cacodylate buffer, incubated with 2%OsO4 (Science Services) in 0,1 M cacodylate buffer for 2 h at 4 °C, and washed three times with 0,1 M cacodylate buffer. Subsequently, tissue was dehydrated at 4 °C using ascending ethanol series for 15 min 50%, overnight 70%, 15 min 90%, 3 × 15 min 100%, 15 min 50% ethanol/propylene oxide and 2 × 15 min 100% propylene oxide. Tissue was infiltrated for 2 h with 50% epon in propylene oxide (Sigma Aldrich), 2 h 75% epon in propylene oxide, overnight 100% epon and finally 2 h with fresh epon at RT. Tissue was transferred into embedding moulds and cured for 72 h at 60 °C. Ultrathin sections of 70 nm were cut using an ultramicrotome (Leica Microsystems, UC6) and a diamond knife (Diatome, Biel, Switzerland) and stained with 1.5% uranyl acetate for 15 min at 37 °C and lead citrate solution for 4 min. Images were acquired using a JEM-2100 Plus Transmission Electron Microscope (JEOL) operating at 80 kV equipped with a OneView 4 K camera (Gatan).
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3

High-Resolution Ultrastructural Imaging

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Concentrated cells were high pressure frozen (HPF Compact 02; Wohlwend, CH), freeze substituted (in acetone containing 0.25% osmium tetroxide, 0.2% uranyl acetate, and 5% water) (AFS2; Leica, Wetzlar, Germany) and embedded in Epon 812 substitute resin. Freeze-substitution was done as follows: −90 °C for 20 h, from −90 °C to −60 °C for 1 h, −60 °C for 8 h, −60 °C to −30 °C for 1 h, −30 °C for 8 h, and −30 °C to 0 °C for 1 h. At 0 °C, samples were washed three times with acetone before a 1:1 mixture of Epon 812 substitute resin (Fluka Chemical, Buchs, Switzerland) and acetone was applied at room temperature. After 2 h the 1:1 mixture was substituted with pure resin overnight. After another substitution with fresh Epon, samples were polymerized at 60 °C for 2 days. Using an ultramicrotome (UC7; Leica) and a diamond knife (Diatome, Biel, Switzerland) 50 nm sections were cut from the Epon blocks and transferred to 100-mesh copper grids coated with pioloform. For additional contrast, sections were poststained with 2% uranyl acetate for 20–30 min and subsequently with lead citrate for another 1–2 min. Sections were finally analyzed and imaged using a JEM-2100 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a 2k × 2k F214 fast-scan CCD camera (TVIPS, Gauting, Germany).
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4

Ultrastructural Analysis of Human iPSC-Derived Motoneurons

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Human iPSC-derived motoneurons were grown on sapphire discs. Later the discs were clamped between two aluminum planchettes in a 100-μm deep cavity. Samples were high pressure frozen using a Wohlwend HPF Compact 01 high-pressure freezer (Engineering Office M. Wohlwend GmbH). Freeze substitution was performed as described (Halbedl et al., 2016 (link)). The substitution medium consisted of acetone with 0.2% osmium tetroxide (Plano Agar), 0.1% uranyl acetate (Merck), and 5% of water. After substitution for 18 h from -90°C to RT, samples were washed with acetone (Sigma) and gradually embedded in Epon (Fluka). Ultra-thin sections (75–80 nm) were cut parallel to the sapphire disc with a Leica Ultracut UCT ultramicrotome using a diamond knife (Diatome). This was kindly done by the central EM unit (Ulm University). Samples were imaged with a JEOL 1400 Transmission Electron Microscope (JEOL) and the images were digitally recorded with a Veleta camera (Olympus).
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5

Ultrastructural Analysis of Oil Granulomas

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Oil granulomas were fixed in a solution containing 2.5 % glutaraldehyde, 4 % formaldehyde and 0.1 M sodium phosphate buffer for 4 h at room temperature. Part of the granulomas was cut in two halves to allow the fixative to diffuse faster throughout the granulomas. After rinsing in the same buffer (3 × 10 min), the samples were dehydrated in graded series of acetone till absolute and embedded in epoxy resin (Embed 812). Ultrathin-sections (70 nm) were obtained using a ultramicrotome (Leica) and a diamond knife (Diatome), collected in 300 mesh copper grids and stained with 5 % uranyl acetate for 30 min and 1 % lead citrate for 3 min. The sections were observed in a Zeiss 900 TEM operated at 80 kV and images (2048 × 2048 pixels) acquired using a CCD camera (Olympus).
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6

Ultrastructural Analysis of Mineral Crystals

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Tissue samples were preserved in 2% paraformaldehyde and 0.5% glutaraldehyde in 0.05 M cacodylate buffer (pH 7.4) at 4 °C for 4–18 h. Following fixation, the tissues were treated with reduced osmium tetroxide followed by dehydration in ethyl alcohol. The Spurr’s resin (Electron Microscopy Sciences) was prepared and mixed 1:1 with propylene oxide and incubated overnight on a rotator. A change of Spurr’s resin:propylene oxide at 3:1 was made, and samples were infiltrated overnight. The final embedding was completed in pure Spurr’s resin (hard mixture) for 12–18 h and polymerized at 60 °C. Embedded samples were thin-sectioned (60–80 nm thickness) for electron microscopy using a diamond knife (Diatome) on a Reichert Ultracut E and analyzed using a Philips CM-12 transmission electron microscope at 80 kV accelerating voltage. Mineral crystal size and arrangement were studied by tilting the specimen stage through 0–20° of tilt and/or by darkfield imaging [19 (link)]. Individual crystals could be measured in the darkfield mode and by using the 002-diffraction line from selected-area diffraction.
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7

Evaluating Endothelial Permeability via TEM

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To examine endothelial permeability, aortic tissues were fixed for 12 h in 2% glutaraldehyde–paraformaldehyde in 0.1 M phosphate buffer (pH 7.4), washed in 0.1 M phosphate buffer, and postfixed with 1% OsO4 dissolved in 0.1 M phosphate buffer for 2 h. Then, samples were dehydrated in ethanol and infiltrated with propylene oxide. Specimens were embedded with a Poly/Bed 812 kit (Polysciences), and 200–250-nm-thick sections were initially cut and stained with toluidine blue (T3260; Sigma-Aldrich, St. Louis, MO, USA) for light microscopy. Ultrathin sections (70 nm) were cut by a LEICA EM UC-7 (Leica Microsystems, Vienna, Austria) with a diamond knife (Diatome) and were double stained with 6% uranyl acetate (22400; Electron Microscopy Sciences, Hatfield, PA, USA) for 20 min and lead citrate (Thermo Scientific, Waltham, MA, USA) for 10 min. All sections were evaluated by transmission electron microscopy (TEM) (JEM-1011; JEOL Ltd., Tokyo, Japan) at an acceleration voltage of 80 kV.
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8

TEM Analysis of Cell Ultrastructure

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TEM analysis was carried out as described previously (17 (link)). Briefly, cells were fixed with 2% (v/v) paraformaldehyde and 2% (v/v) glutaraldehyde in 100 mM sodium cacodylate buffer (pH 7.4) for 3 hours at 4°C. The supernatant was gently removed, and the cells were rinsed thrice with 130 mM sucrose, 10 mM 2-mercaptoethanol, and 100 mM sodium cacodylate buffer (pH 7.4) for 20 min. The samples were then fixed with 1% (w/v) osmium tetroxide in 100 mM sodium cacodylate buffer (pH 7.4) and rinsed thrice with ultrapure water (Milli-Q; Millipore, Billerica, MA, USA). The samples were then dehydrated in a graded series of acetone [20, 50, 70, 90, and 100% (v/v)] for 10 min at each concentration of acetone. Thereafter, samples were infiltrated through a series of graded acetone/Epon/Spurr’s epoxy resin, followed by embedding in 100% (w/v) Spurr’s epoxy resin and polymerization at 60°C for 24 hours. Ultrathin sections were cut on an ultramicrotome LKB 8800 (LKB Instruments, USA) using a diamond knife (Diatome, Hatfield, USA). Subsequently, sections were stained with uranyl acetate and lead citrate and observed under a JEM-1200EX transmission electron microscope (JEOL, Japan), and images were recorded on EM (electron microscopy) film 4489 (Eastman-Kodak, NY, USA).
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9

Ultrastructural Analysis of Hippocampal CA1 Region

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Coronal sections (250 μm-thick) encompassing the CA1 region of the hippocampus were prepared for EM as reported previously
[86 (link)]. Briefly, slices were cryoprotected in graded phosphate buffer/glycerol washes at 4°C, and manually microdissected to obtain blocks containing the CA1 region. The blocks were rapidly freeze-plunged into liquid propane cooled by liquid nitrogen (-190°C) in a Universal cryofixation System KF80 (Reichert-Jung) and subsequently immersed in 1.5% uranyl acetate dissolved in anhydrous methanol at -90°C for 24 hours in a cryosubstitution unit (Leica). Block temperatures were raised from -90 to -45°C in steps of 4°C/hour, washed with anhydrous methanol, and infiltrated with Lowicryl resin (Electron Microscopy Sciences) at -45°C. The resin was polymerized by exposure to ultraviolet light (360 nm) for 48 hours at -45°C followed by 24 hours at 0°C. Block faces were trimmed and ultrathin sections (90 nm) were cut with a diamond knife (Diatome) on an ultramicrotome (Reichert-Jung) and serial sections of at least 5 sections were collected on formvar/carbon-coated nickel slot grids (Electron Microscopy Sciences).
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10

Histological Analysis of Larynx Mineralization

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To distinguish between calcification and ossification of the mineralized parts, one larynx (high line male #25) was embedded in epoxy resin for sectioning and histological analysis. The specimen was first fixed as described in the clearing and staining section. It was then decalcified with 20% EDTA and dehydrated with acidified dimethoxypropane prior to embedding into Agar LVR resin (Agar Scientific, Stansted, UK) using acetone as an intermediate. Sections of cured resin blocks were sliced at 1 µm section thickness with a Leica UC6 ultramicrotome equipped with a diamond knife (Diatome, Nidau, Switzerland) and analyzed with a Nikon NiU compound microscope.
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