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2 protocols using h3k56ac ab76307

1

Histone Acetylation Analysis Protocol

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Recombinant p300 (1195–1662) was from Enzo and pCAF (503–668) was obtained from Caymen Chemical. (R)- and (S)-ibuprofen and celecoxib were purchased from Santa Cruz. Haloxyfop was purchased from Fluka. Salicylic acid, racemic ibuprofen, naproxen, ketoprofen, diclofenac, 5-fluoroSalicylic acid, phenylacetic acid, benzoic acid and sodium acetate were purchased from Sigma. All purchased chemicals were used without further purification unless otherwise noted. All synthesized CoA analogues were HPLC purified, with purity verified by LC-MS prior to use, and concentrations were measured by UV analysis on a Thermo-Fisher Nanodrop 2000 spectrophotometer in distilled and deionized water (ddH2O) using the molar extinction coefficient (ε) for Coenzyme A of 15,000 M−1cm−1 at λmax of 259 nm. Qubit Protein Assay kit (Life Technologies) was used to determine histone extract concentrations. Labchip EZ-Reader 12-sipper chip (#760404) and ProfilerPro Separation Buffer (#760367) were purchased from Perkin-Elmer. Antibodies11 used are as follows: H3K9Ac (9649P), H3K14Ac (7627P), H3K27Ac (8173) antibodies were purchased from Cell Signaling Technologies. The H2B K12/K15Ac (ab1759), total H2B (ab1790), and H3K56Ac (ab76307) antibodies were purchased from abcam. The pan-H4Ac (06–866) and pan-H3Ac (07–690) antibodies were purchased from Millipore Sigma.
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2

Western Blot Analysis of MDA-MB-231 Cells

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For western blot analysis, MDA-MB-231 cells were washed once with ice-cold PBS and lysed with radioimmunoprecipitation assay (RIPA) lysis buffer containing protease inhibitors. Fifty micrograms of protein from each sample was resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a nitrocellulose membrane. The anti-GAPDH (sc-32233) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA); the anti-P21 (GTX629543) antibody was purchased from GeneTex Inc. (Irvine, CA, USA); and the anti-H3 (ab1791), H3K18AC (ab1191) and H3K56AC (ab76307) were purchased from Abcam plc (Cambridge, UK); and anti-H4K16AC (CS204361) antibody was purchased from Millipore (Billerica, MA, USA); and anti-PARP (Poly (ADP-ribose) polymerase, #9532) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). The secondary anti-mouse and anti-rabbit antibodies were purchased from Santa Cruz Biotechnology. All primary antibodies were used at a 1:1000 dilution with overnight hybridization, followed by one-hour incubation with a 1:4000 dilution of the secondary antibodies.
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