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5 protocols using cd3 fitc clone sk7

1

SARS-CoV-2 Omicron Immune Cell Profiling

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Freshly isolated PBMCs (1 × 105) from Omicron COVID-19 cases (n = 19) were used for surface staining of NK cells, NKT-like cells, B cells, T cells, memory B, and memory T cells using cocktail of antihuman antibodies (CD19 PercpCy5.5 (clone HB-19), CD27 PECy7 (clone M-T271), CD3 APCH7 (clone SK7), CD4 BV480 (clone SK3), CD8 FITC (clone RPA-T8), CD45RA PECy7 (clone HI 100), CD62L APC (clone DREG-56), CCR7 PE (clone 2-LI-A) and NK Tritest (CD3 FITC: clone SK7, CD56 PE:clone NCAM 16.2, CD16 PE: clone B73.1, CD 45 RA: C8Mab-1)) all from BD Biosciences following a previously described protocol [18 (link)–23 (link)]. PE-Cy™7 Mouse IgG1 κ Isotype Control (BD Biosciences, San Jose, CA, USA) was used as the negative control.
Briefly, PBMCs were incubated with fluorochrome-tagged antihuman monoclonal antibodies for 30 min in the dark. After washing, the cells were fixed with 2% paraformaldehyde. The cells were acquired on FACS Aria II (BD Biosciences, San Jose, CA, USA). For each experiment, 50,000 events were acquired within the lymphocyte gate with appropriate isotype control. Data were analyzed using FACS Diva software (Becton Dickinson, San Jose, CA, USA), and results are expressed as the percentage of positive cells in the gated population. The gating strategy is depicted in Figure 1.
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2

Fluorochrome-Conjugated Antibody Panel

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Fluorochrome-conjugated monoclonal antibodies (mAbs) used included FITC-Mouse-IgG1 (clone X40), PE-Mouse-IgG1 (clone MOPC-21), APC-Mouse-IgG1 (clone SJ25C1), PerCP-Mouse-IgG1 (clone X40), APC-CD25 (clone 2A3), PerCP-CD4 (clone SK3), FITC-CD8 (clone 2D1), CD19-APC (clone SJ25C1), HLA-DR (clone L243), CD38-APC (clone HB7), CD3-FITC (clone SK7), CD16 + 56-PE (clone B73.1), CD45-PerCP (clone 2D1), CD4-FITC (clone SK3), CD8-PE (clone SK1) (BD Biosciences, San Jose, CA).
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3

Analyzing STAT3 Expression and Phosphorylation

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For analysis of STAT3 expression and STAT3 phosphorylation, PBMCs were used either unstimulated or stimulated with human recombinant IL-6 (0.5μg/ml, PeproTech, Hamburg, Germany) for 15 min at 37°C. EBV-transformed B cell lines were stimulated with IFN-α (0.5μg/ml, PeproTech, Hamburg, Germany) for 5, 15, 60 and 150 min at 37°C. Cells were fixed (Lyse/Fix buffer, BD Biosciences) and permeabilized (Fix/Perm III buffer, BD Biosciences) according to the manufacturer΄s instructions. Cells were stained with anti-STAT3-FITC (clone #232209; R&D Systems Wiesbaden-Nordenstadt, Germany), anti CD19 BV421 (clone HIB19, Biolegend), or with phospho-specific PE-coupled anti-STAT3 (pY705) antibodies (clone 4/P-STAT3, BD Biosciences), CD3-FITC (clone SK7, BD Bioscience). Fixable viability dye eFluor 506 (eBioscience, Frankfurt, Germany) was used according to the manufacturer΄s instructions.
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4

Quantifying HIV-1 Viral Load and T-Cell Counts

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Plasma HIV-1 viral loads (PVL), as well as CD4 and CD8 counts were determined in
a laboratory operating under the Clinical Laboratory Improvement Amendment (CLIA). The
plasma viral load was measured using the ultrasensitive Quantiplex HIV-1 bDNA version 3.0
(Bayer). CD4+ and CD8+ T-cell counts were determined by four-color
flow cytometry. The BD Multitest (BD Biosciences) that was used includes the following
Abs: CD3FITC (clone SK7); CD4APC (clone SK3); CD8PE(clone SK1); and CD45PerCP (clone 2D1). Samples were acquired on either
FACSCalibur or FACSCanto (both BD Biosciences). CD4+ cell counts were
calculated as percent of CD4+ CD3+ cells within CD45+lymphocytes divided by 1% of the white blood cell count. The corresponding
calculation was performed for CD8+ cell counts.
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5

Phenotyping IFN-γ-Primed Tumor-Infiltrating Lymphocytes

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Tumor cells were either pretreated with IFN-γ (100 IU/mL, Peprotech) or left untreated for 3 days. TILs were then added in a 1:1 ratio, with protein transport inhibitors brefeldin A (1:1000 dilution, GolgiPlug, catalog 555029, BD), Monensin (1:1000 dilution, GolgiStop, catalog 554724, BD), and anti–CD107a-BV421 antibodies (clone H4A3, BD 562623). Tumor cells and TILs were cocultured for 5 hours, after which all cells were stained with Near-IR LIVE/DEAD (Life Technologies) and for surface markers CD3-FITC (clone SK7, BD 345764), CD8-QDot605 (clone 3B5, Thermo Fisher Q10009), and CD4-BV711 (clone SK3, BD, catalog 563028). Subsequently, the cells were fixed and permeabilized (eBioscience) overnight and stained for intracellular cytokines TNF-APC (clone MAb11, BD catalog, 554514) and IFN-γ–PE-Cy7 (clone B27, BD, catalog 557643). Cells were analyzed on a Novocyte Quanteon (ACEA Biosciences). See details related to antibodies used in Supplemental Table 2.
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