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4 protocols using normal goat serum (ngs)

1

Immunohistochemical Analysis of Muscle Proteins

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Paraffin-embedded muscle sections were deparaffinized using xylene (Junsei, Tokyo, Japan), rehydrated using an ethanol gradient, and treated with methanol/H2O2 (Junsei) to quench endogenous peroxidase activity. Muscle sections were blocked with 1% normal goat serum (SeraCare Life Sciences, Milford, MA, USA) and incubated with protein-specific antibody [FMOD, MSTN, MYOG, MuRF1, Atrogin1, RAGE, Glb1, PPARγ, CD36, and CD163 (1:50)] overnight at 4 °C. Sections were then treated with HRP-conjugated secondary antibody (1:100; Santa Cruz Biotechnology), incubated for 1 h at room temperature, counterstained with hematoxylin, dehydrated, mounted, and examined under an optical microscope (Leica, Seoul, Korea). Morphological changes were examined in hematoxylin and eosin-stained sections under an optical microscope (Leica, Wetzlar, Germany).
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2

Immunohistochemical Profiling of Tissue Samples

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Paraformaldehyde-fixed, paraffin-embedded tissue sections were deparaffinized, rehydrated, and then boiled using the EZ-Retriever System (BioGenex) with 0.01 mol/liter citrate buffer, pH 6.0 (Sigma-Aldrich), for antigen retrieval. Endogenous peroxidases were blocked with 0.3% H2O2 for 15 min. Nonspecific epitopes were blocked with 10% normal goat serum (Seracare Life Sciences) for 30 min. The sections were incubated overnight at 4°C with antibodies against mouse CD8a, Gzmb, Ly6G, cleaved caspase 3 and Ki-6, and human CD15 and RORγt. Antibody details, including final concentrations, can be found in Table S3. This was followed by using a SignalStain Boost IHC Detection Reagent and DAB Substrate Kit (Cell Signaling Technology) following the manufacturer’s instructions. Slides were then counterstained with hematoxylin, mounted in Acrymount (StatLab), and visualized under a light microscope.
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3

Immunohistochemical Analysis of Muscle Tissues

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The sections of paraffin-embedded muscle tissue were deparaffinized and hydrated with xylene (Junsei, Tokyo, Japan) and ethanol (Merck), respectively, and endogenous peroxidase activity was quenched in 0.3% H2O2/methanol. The sections were then either stained with hematoxylin and eosin (Thermo Fisher Scientific) for morphological observation or blocked with 1% normal goat serum (SeraCare Life Sciences), incubated with primary antibodies [TTR (1:50), D2 (1:50), or FNDC5 (1:50)] overnight at 4 °C, and then incubated with horse radish peroxidase–conjugated secondary antibody (1:100). Positive signals were visualized by adding horse radish peroxidase-conjugated streptavidin (Vector, CA, USA). Nuclei of stained sections were stained with hematoxylin and then dehydrated, mounted, and observed by a light microscope (Leica, Wetzlar, Germany).
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4

Immunofluorescence Staining of Cellular Proteins

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The cells were fixed with 4% formaldehyde (Sigma Aldrich) and permeabilized with 0.2% Triton X 100 (Sigma Aldrich). After blocking with 1% normal goat serum (SeraCare Life Sciences, Milford, MA, USA) for 30 min in a humid environment, cells were incubated with primary antibodies [TTR (1:50), MYOD (1:50), MYOG (1:50), MYL2 (1:50), D2 (1:50), RXRγ (1:50), TRα (1:50), or FNDC5 (1:50)] at 4 °C in a humid environment overnight. Secondary antibody (1: 100; Alexa Fluor 594 goat anti-rabbit or anti-mouse; Thermo Fisher Scientific) was applied for 1 h at room temperature. DAPI was used to stain the cells (Sigma-Aldrich) and imaged using a fluorescence microscope equipped with a digital camera (Nikon, Tokyo, Japan).
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