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7 protocols using anti nr1

1

Hippocampal Protein Expression Analysis in Injured Mice

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Ipsilateral hippocampal tissues from sham and CCI injured mice were homogenized in RIPA buffer with protease and phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO) and benzonase nuclease (Millipore Corporation, Billerica, MA) and mixed by rocking at 4 °C for at least 15 min. Tissues were centrifuged, supernatant was recovered, samples were diluted and standardized to protein concentrations. Protein samples were separated on 8–10% SDS-PAGE gel and transferred to a nitrocellulose membrane. Membranes were then blocked with 5% milk or 5% BSA in 0.1 M phosphate buffer with 0.1% Tween-20 for 1 h at room temperature (RT) and incubated overnight at 4 °C with primary antibodies. Membranes were incubated for 1 h at RT with HRP-conjugated secondary antibodies (Jackson Immunoresearch Laboratories, West Grove, PA). Bands were visualized using SuperSignal substrate (ThermoScientific, Pittsburg, PA). The following primary antibodies were used: anti-GluR1, anti-NR1, anti-NR2B (EMD Millipore, Billerica, MA), anti-GFAP (BD Biosciences, San Jose, CA), anti-SNAP25, anti-SNAP23 (ABCAM, Cambridge, MA) and anti-β-tubulin (Sigma-Aldrich, St. Louis, MO) antibodies. ImageJ was used to perform density analysis. Protein measurements were standardized to β-tubulin and normalized to average WT sham signals.
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2

Hippocampal Protein Expression Analysis in Injured Mice

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Ipsilateral hippocampal tissues from sham and CCI injured mice were homogenized in RIPA buffer with protease and phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO) and benzonase nuclease (Millipore Corporation, Billerica, MA) and mixed by rocking at 4 °C for at least 15 min. Tissues were centrifuged, supernatant was recovered, samples were diluted and standardized to protein concentrations. Protein samples were separated on 8–10% SDS-PAGE gel and transferred to a nitrocellulose membrane. Membranes were then blocked with 5% milk or 5% BSA in 0.1 M phosphate buffer with 0.1% Tween-20 for 1 h at room temperature (RT) and incubated overnight at 4 °C with primary antibodies. Membranes were incubated for 1 h at RT with HRP-conjugated secondary antibodies (Jackson Immunoresearch Laboratories, West Grove, PA). Bands were visualized using SuperSignal substrate (ThermoScientific, Pittsburg, PA). The following primary antibodies were used: anti-GluR1, anti-NR1, anti-NR2B (EMD Millipore, Billerica, MA), anti-GFAP (BD Biosciences, San Jose, CA), anti-SNAP25, anti-SNAP23 (ABCAM, Cambridge, MA) and anti-β-tubulin (Sigma-Aldrich, St. Louis, MO) antibodies. ImageJ was used to perform density analysis. Protein measurements were standardized to β-tubulin and normalized to average WT sham signals.
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3

Surface Biotinylation and Western Blotting

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Surface biotinylation was performed according to the previous studies (Kim et al., 2015a (link); Kim et al., 2015b (link); Kim and Ziff, 2014 (link); Sztukowski et al., 2018 (link)). Equal amounts of protein were loaded on 10% SDS-PAGE gel and transferred to nitrocellulose membranes. Membranes were blotted with anti-NR1 (Millipore, 1:1000), anti-GluA1 (Millipore, 1:2000), anti-GluA2 (Abcam, Cambridge, UK, 1:2000), anti-phosphorylated GluA1 S845 (Millipore, 1:1000) and anti-actin (Abcam, 1:2000) antibodies and developed with Enhanced Chemiluminescence (ECL) (Thermo Fisher Scientific, Waltham, MA). Immunoblots were at least duplicated for quantitative analysis.
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Investigating HIV-1 Protein Interactions

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HIV-1 gp120 protein (HIV-1 gp120IIIB, Cat # 11784; gp120Bal, Cat # 4961) and antibodies against HIV-1 proteins were obtained through the NIH AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH. Antibodies for immunoblotting: anti-HIV-1 gp120 antibody (1:1000, Cat # 4091), anti-HIV-1 Tat (1:1000, Cat # 4672), anti-HIV-1 P24 (1:500, Cat # 6458) and anti-HIV-1 Vpr (1:500, Cat # 11836), anti-GFAP (1:5000, Cat # 04-1062, Millipore), anti-Iba1 (1:2000, Cat # 016-20001, Wako), anti-TNFα (1:1000, Cat # ab1793, Abcam), anti-IL-1β (1:1000, Cat # sc-7884, Santa Cruz), anti-PSD95 (1:2000, Cat # 2507, Cell Signaling), anti-Synapsin I (1:2000, Cat # AB1543, Millipore), anti-NR1 (1:2000, Cat # 06-311, Millipore), anti-phospho JNK (1:1000, Cat # 9251, Cell Signaling), anti-phospho-ERK1/2 (1:1000, Cat # 4370, Cell Signaling), anti-phospho-CaMKIIα (1:1000, Cat # sc-12886-R, Santa Cruz) and anti-β-actin (1:1000, Cat # sc-1616-R, Santa Cruz). Antibody for fluorescent immunostaining: anti-PGP 9.5 (1:500, Cat # 7863-0504, AbD). Antibody for DAB staining: anti-PGP9.5 (1:4000, Cat # AB1761, Millipore).
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5

Western Blot Analysis of Mouse Brain Proteins

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For western blotting experiments, mice aged 3–4 months were decapitated and brains were quickly removed and transferred to ice. Target brain regions were obtained under stereoscope and lysed in lysis buffer (50 Mm Tris-HCL; 150 mM NaCl; 1% Triton X-100; 10% glycerol; 0.5% BSA; pH 7.4). 1× protease inhibitor cocktail (Roche) were added to lysis buffer before use. The concentrations of samples were determined using the bicinchoninic acid (BCA) assay (Thermo) and were analyzed directly via sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The proteins were then transferred to polyvinylidene difluoride membranes. The membranes were incubated in the following primary antibodies overnight at 4 °C (anti-NR1, 1:1000, #05–43256 (link), Millipore, given by Yelin Chen lab; anti-GAPDH, 1:3000, Abmart, M2002857 (link)). The membranes were then incubated in an anti-rabbit or anti-mouse secondary antibody conjugated to horseradish peroxidase (1:5000, TDYbio S001 and S004). Immunoblots were analyzed with ImageJ.
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6

Investigating HIV-1 gp120 Interactions

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HIV-1 coat protein gp120Bal (Cat # 4961) was obtained from the NIH AIDS Research and Reference Reagent Program, Division of AIDS, National Institute of Allergy and Infectious Diseases, NIH. The protein in PBS was aliquoted and stored at −80°C until use. Gp120 protein with only a single freeze-thaw cycle was used. Maraviroc (Cat# 11580, NIH AIDS Research and Reference Reagent Program) and D-APV (cat# 165304; Calbiochem) were dissolved in ultrapure water. Bicyclam JM-2987 (AMD3100) (Cat#8128; NIH AIDS Research and Reference Reagent Program) and CNQX (Cat#C239; Sigma) were prepared in DMSO. Antibodies for immunoblotting were: anti-NR1 (1:2,000; Cat # 06-311; Millipore), anti-phospho-NR1 (Ser896) (1:1000; Cat#06-640; Millipore), anti-phospho-NR1 (Ser897) (1:1000; Cat#ABN99; Millipore), caspase-3 (1:1000; Cat#9662; Cell Signaling Technology) and anti-β-actin (1:1,000; Cat # sc-1616-R; Santa Cruz Biotechnology) antibodies. Antibodies for immunofluorescence staining are: microtubule-associated protein-2 (MAP-2) (1:500; Cat#ab5392, Abcam), Cleaved caspase-3 (Asp175) (5A1E) (1:200, Cat# 9661, Cell Signaling Technology).
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7

Analyzing Protein Expression in BLA Tissues

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Western blotting was performed in accordance with standard procedures (Molecular Clone, Edition II). BLA tissues were collected as described above and homogenized in ice‐cold lysis buffer containing phosphatase and protease inhibitors. Twenty micrograms of total protein from the tissues was resolved by SDS‐PAGE and transferred to PVDF membranes (Millipore, USA). After blocking with 5% nonfat milk, the following primary antibodies were applied: anti‐NR1 (1:3000, Millipore, USA), anti‐Gad67 (1:1000, GeneTex, USA), anti‐NR2A(1:500, Proteintech, China), anti‐NR2B(1:500, Proteintech, China), anti‐NR3A(1:500, Invitrogen, USA), anti‐NR3B(1:500, Invitrogen, USA), anti‐Dcn (1:1000, Abcam, USA), anti‐Col6a3 (1:500, Santa Cruz, USA), anti‐Col17a1 (1:1000, Invitrogen, USA), anti‐β‐actin (1:5000, Cell Signaling, USA), and antimouse/rabbit secondary antibodies (1:5000, ABclonal, China). Images were captured using a Bio‐Rad imaging system (Bio‐Rad, China), and the bands were analyzed by ImageJ (Version 1.53C).
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