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4 protocols using goat anti mouse or goat anti rabbit igg

1

Protein Expression Analysis Protocol

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Whole cell lysates were prepared using standard methods. Specific antibodies against OPN, H3K9me3, total-H3, and CRMP1 (ab8448, ab8898, ab10799 and ab62558, respectively, Abcam, Cambridge, MA), BIM (#2933, Cell Signaling, Danvers, MA), and β-actin (A2228, Sigma-Aldrich, Natick, MA) were used with 1:100 dilution. Immunocomplexes were visualized by enhanced chemiluminescence detection (Amersham Corp, Pittsburgh, PA) using goat anti-mouse or goat anti-rabbit IgG coupled to horseradish peroxidase as a secondary antibody (Santa Cruz, Dallas, TX).
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2

Detecting Protein Signaling in CRC Cells

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CRC cells were incubated for 4 h with PMPs as described above for the detection of CXCR4, MMP-2, and MMP-9 and lysed using RIPA buffer (Sigma Aldrich) or incubated for 10 min with PMPs for the detection of nonphosphorylated and phosphorylated ERK1/2 and p38MAPK and lysed with M-PER Mammalian Protein Extraction Reagent (Thermo Fisher Scientific). The lysates (25 µg of protein) were then separated on an SDS‒PAGE 10% polyacrylamide gel, transferred to a nitrocellulose membrane and incubated with rabbit anti-human antibodies against nonphosphorylated p38MAPK (Cell Signaling) and ERK1/2 (Thermo Fisher Scientific) and phosphorylated p38MAPK (Cell Signaling) or mouse anti-human antibodies against CXCR4 (Thermo Fisher Scientific), MMP-2, MMP-9 (Thermo Fisher Scientific) and phosphorylated ERK1/2 (Thermo Fisher Scientific), followed by incubation with secondary goat anti-mouse or goat-anti-rabbit IgG (Santa Cruz Biotechnology) conjugated with horseradish peroxidase (HRP) (Additional file 2: Supplementary Methods).
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3

Protein Expression Analysis of Transfected Cells

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Cells were collected at 48 hours after transfection. The total protein was extracted from cells with RIPA lysis buffer. Proteins were separated by electrophoresis and transferred to PVDF membrane. After blocking with 5% skimmed milk, the membrane was incubated with primary antibodies of rabbit anti-mGluR7, rabbit polyclonal anti-Nestin, rabbit polyclonal anti- Ki67, mouse anti-cyclin D1, rabbit monoclonal anti-cyclin dependent kinase 2 (CDK2), rabbit polyclonal anti- serine/threonine kinase (AKT), mouse monoclonal anti-p-AKT, rabbit polyclonal anti-Caspase-3, rabbit polyclonal anti-Caspase-9, and anti-β-actin at 4°C overnight. β-actin was used as internal reference. All primary antibodies were purchased from Santa Cruz Biotechnology, USA. After that, the secondary antibody (goat anti-rabbit or goat anti-mouse IgG, Santa Cruz Biotechnology) was added and incubated at room temperature for 1.5 hours. After washing, the membrane was developed.
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4

Western Blot Analysis of Protein Markers

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Protein concentrations in the cell, nuclei, and cytoplasmic extracts were measured using the Protein Assay Kit 2 according to the manufacturer's instructions (Bio-Rad Laboratories, Hercules, CA, USA). Thirty micrograms of proteins from the cell or nuclei fractions were separated by SDS-polyacrylamide gel electrophoresis using 10% polyacrylamide gel. Proteins were then transferred onto polyvinylidene difluoride membranes (Immobilon-P, Millipore, MA, USA). The membranes were blocked overnight using 5% nonfat milk in 50 mM Tris/150 mM HCl (pH 7.5) containing 0.1% Tween 20 (TBS/Tween). After three 5-min rinses with TBS/Tween, membranes were probed with polyclonal anti-PPARγ, anti-COX-2, anti-p65 NF-κB, or anti-IκBα (Santa Cruz Biotechnology, Heidelberg, Germany) for 1 h at room temperature. After three 5-min rinses with TBS/Tween, horseradish peroxidase- (HRP-) conjugated secondary antibodies goat anti-rabbit or goat anti-mouse IgG (Santa Cruz Biotechnology) were applied for 1 h at room temperature. Protein bands were visualized using a chemiluminescence detection system (Immun-Star HRP; Bio-Rad Laboratories, Hercules, CA, USA). To normalize protein signals, stripped PVDF membranes were reprobed with monoclonal anti-β-actin (Sigma-Aldrich) for cytosolic and cell fractions or with polyclonal anti-lamin A/C (Santa Cruz Biotechnology).
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