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4 protocols using irdye 680lt donkey anti mouse secondary antibody

1

Western Blotting Procedure for Protein Analysis

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Western blotting was performed using standard methods. Briefly, cells were scraped in PBS and lysed in RIPA buffer (150mM NaCl, 1% NP-40 alternative, 0.5% Sodium deoxycholate, 0.1% SDS, 40mM Tris pH8.0) with 1mM Benzamidine HCl, 1µg/mL antipain, 5µg/mL aprotinin, 1µg/mL leupeptin, 1mM Phenylmethansulfonyl fluoride, 10mM NaF, 2mM imidazole, 1.15mM Sodium molybdate, 4mM Sodium tartrate and 2mM Sodium orthovanadate (Sigma)) for 20 minutes on ice and cleared by centrifugation. Protein was quantified using Bradford reagent and 20–30µg of protein were run per lane of 4–12% Bis-Tris gels (Thermo Fisher Scientific) using either MOPS or MES buffer. Protein was transferred to nitrocellulose membrane at 350mA for 2h in transfer buffer (15% methanol, 191mM glycine, 25mM Tris base, 0.1% SDS, pH8.3). Membranes were blocked in 5% non-fat milk powder in PBS+0.2% Tween 20 (PBST) and incubated overnight at 4°C in primary antibody diluted in blocking solution. Primary antibodies are listed in Table 2. After extensive washing in PBST blots were incubated for 1h at room temperature (RT) in Licor blocking solution (1:1 with PBST) containing IRDye 800CWDonkey anti-Rabbit or IRDye 680LT Donkey anti-Mouse secondary antibody (1:10000, Licor) as required. Blots were scanned on a Licor Odyssey scanner at a medium resolution setting and exported to ImageJ (NIH).
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2

Trop2 Knockdown Protein Analysis

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Proteins were extracted from control Meta4 organoids as well as three shRNA Trop2 knockdown lines using M-PER lysis buffer (Thermo Fisher) with protease and phosphatase inhibitor cocktails. The Direct Detect IR spectrometer (Millipore) was used to measure protein concentration. For protein separation, 7 μg of total protein were loaded onto a Mini-Protean TGX Precast Gel (Bio-Rad). The separate proteins were transferred to a nitrocellulose membrane (Bio-Rad) for protein detection. The membranes were incubated with the Odyssey blocking solution (LI-COR Biosciences) for 1 hour at room temperature for blocking and incubated overnight at 4°C with Trop2 anti-goat (R&D systems AF1122, 1:2,000) and β-Actin anti-mouse (Sigma A5316, AC-74, 1:5,000) diluted in the Odyssey blocking solution supplemented with 0.2% Tween-20. After washing with TBS-T three times, the membranes were incubated with IRDye 800CW donkey anti-goat (LI-COR Biosciences 926–32214, 1:10,000) and IRDye 680LT donkey anti-mouse secondary antibody (LI-COR Biosciences 926–68022, 1:10,000) for 1 hour at room temperature. The membranes were washed with TBS-T three times and imaged with an Odyssey imaging system (LI-COR Biociences).
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3

Western Blot Analysis of ERK1/2 Phosphorylation

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Proteins were extracted from Meta4 organoids treated with either DMSO vehicle or 1 μM Selumetinib for 1 day using M-PER lysis buffer (Thermo Fisher Scientific) with protease and phosphatase inhibitor cocktails. The protein concentration was measured by the Direct Detect IR spectrometer (Millipore). Eight μg of total protein were loaded onto a Mini-Protean TGX Precast Gel (Bio-Rad) and transferred to a nitrocellulose membrane (Bio-Rad). The membranes were blocked with the Odyssey blocking solution (LI-COR Biosciences) for 1 h at room temperature and incubated overnight at 4 °C with primary antibodies diluted in the Odyssey blocking solution (LI-COR Biosciences) supplemented with 0.2% Tween-20. Primary antibodies used for western blot were ERK1/2 anti-rabbit (Cell Signaling Technology 4695, 1:1000); Phospho-p44/42 MAPK (Erk1/2) anti-rabbit (Cell Signaling Technology 4370S, D13.14.4E, 1:2000); β-Actin anti-mouse (Sigma A5316, AC-74, 1:2500). After primary antibody incubation, the membranes were washed three times in TBS-T and incubated with IRDye 800CW donkey anti-rabbit (LI-COR Biosciences 926-32213, 1:15,000) or IRDye 680LT donkey anti-mouse secondary antibody (LI-COR Biosciences 926-68022, 1:15,000) for 1 h at room temperature. The membranes were washed three times with TBS-T and imaged with an Odyssey imaging system (LI-COR Biociences).
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4

Western Blotting Procedure for Protein Analysis

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Western blotting was performed using standard methods. Briefly, cells were scraped in PBS and lysed in RIPA buffer (150mM NaCl, 1% NP-40 alternative, 0.5% Sodium deoxycholate, 0.1% SDS, 40mM Tris pH8.0) with 1mM Benzamidine HCl, 1µg/mL antipain, 5µg/mL aprotinin, 1µg/mL leupeptin, 1mM Phenylmethansulfonyl fluoride, 10mM NaF, 2mM imidazole, 1.15mM Sodium molybdate, 4mM Sodium tartrate and 2mM Sodium orthovanadate (Sigma)) for 20 minutes on ice and cleared by centrifugation. Protein was quantified using Bradford reagent and 20–30µg of protein were run per lane of 4–12% Bis-Tris gels (Thermo Fisher Scientific) using either MOPS or MES buffer. Protein was transferred to nitrocellulose membrane at 350mA for 2h in transfer buffer (15% methanol, 191mM glycine, 25mM Tris base, 0.1% SDS, pH8.3). Membranes were blocked in 5% non-fat milk powder in PBS+0.2% Tween 20 (PBST) and incubated overnight at 4°C in primary antibody diluted in blocking solution. Primary antibodies are listed in Table 2. After extensive washing in PBST blots were incubated for 1h at room temperature (RT) in Licor blocking solution (1:1 with PBST) containing IRDye 800CWDonkey anti-Rabbit or IRDye 680LT Donkey anti-Mouse secondary antibody (1:10000, Licor) as required. Blots were scanned on a Licor Odyssey scanner at a medium resolution setting and exported to ImageJ (NIH).
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