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4 protocols using rat collagen 1

1

Immunofluorescence Staining of Infected Cells

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Cells were plated in 8-well chamber slides (Matsunami, Osaka, Japan) coated with rat collagen I (Corning, Corning, NY). Infected or transfected cells were fixed in 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS; Nacalai Tesque, Japan) for 10 min and then permeabilized with 0.5% Triton X-100 in PBS for 5 min. The cells were blocked with Blocking One solution (Nacalai Tesque) for 30 min, followed by incubation with primary antibodies overnight at 4°C and secondary antibodies for 1 h at room temperature. For nuclei and rRNA staining, the cells were treated with Hoechst 33342 (Thermo Fisher Scientific) and Nucleolus Bright Red (Dojindo, Japan), respectively, for 10 min. Section images were recorded using DeltaVision Elite (GE Healthcare) with a 60× oil objective and then deconvolved and projected using the Quick Projection tool by softWoRx (GE Healthcare).
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2

In Vitro Capillary Sprouting Assay

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In vitro sprouting and quantitation were performed as described [15 (link)] with some modifications. Cells grown in ECGM were loaded on Cytodex 3 microcarrier (MC) beads (C3275, Sigma, MO) at 30 cells per bead. Beads had been recoated with 10 μg/mL Rat Collagen I (354236, Corning, NY) solution. pCECs were stimulated with 4 μg/mL Fc or EphB4-Fc. The number of capillary sprouts exceeding in length the diameter of the MC bead (~175 μm) and containing at least 3 nuclei (as visualized by Hoechst 33258 staining) was determined for 20 MC beads. Cells were photographed on an Olympus IX70 microscope with Retiga Exi camera. At least three biological replicates (cell cultures from different animals). Refer to the figure legend for n corresponding to number of biological replicates.
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3

Isolation and Culture of Primary Liver Cells

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In situ perfusion with collagenase D(Cat No: 17104019, Thermo Fisher) and pronase E (Cat No: 10165921001, Sigma) was used to isolate liver cells from C57BL/6J mice. Mouse primary hepatocytes (PHC) were collected from the fully digested liver after centrifugation at 500 rpm. The supernatant was used to isolate primary Kupffer cells (KC) and hepatic stellate cells (HSC) by gradient Nycodenz (Cat No: AXS1002424, Axis‐Shield) density centrifugation. Liver sinusoidal endothelial cells (LSEC) were isolated from the above supernatant using the MACS method with CD31 immunomagnetic beads (Miltenyi Biotec, Cat No: 130‐097‐418). The isolated KC, HSC and LSEC were subjected to the RNA extraction and quantitative PCR. To induce the proliferation, PHC was seed on rat collagen I (Corning, Cat No:354236) coated plates with DMEM containing 10% FBS +1% Antibiotic‐Antimycotic (Cat No:15240062, Thermo Fisher) + 30 ng/mL EGF(Cat No: SRP3329, Sigma).
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4

Polyacrylamide Hydrogel Fabrication and Functionalization

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Polyacrylamide (PA) hydrogels were manufactured as described before [17] (link) [18] (link). Briefly, the solutions of 1 kPa PA gel was prepared by mixing 6% acrylamide (Sangon Biotech, China) and 0.05% bis-acrylamide (Sangon Biotech, China), and the solutions of 20 kPa PA gel was prepared by mixing 8% acrylamide and 0.264% bis-acrylamide. Polymerization was initiated with 0.1% tetramethylethylenediamine (TEMED, Klamar, China) and 0.01% ammonium persulfate solution. To make a substrate suitable for each well in a 6-well culture dish, 200 µl of the final solution was dropped onto a glass slide pre-treated with gel slick (Lonza, Switzerland), and a silanized coverslip 30 mm in diameter was placed on the top of the solution. The PA gel yielded was 30 mm in diameter and 200 μm in thickness. After 10 min of polymerization, the glass slide was removed and the coverslip with the gel attached was treated with sulfo-SANPAH (ProteoChem, USA) under UV for 15 min and coated with 0.1 mg/ml rat collagen I (Corning, USA). Before cell seeding, the gels were sterilized by UV for 30 minutes and 75% ethanol.
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