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4 protocols using aew541

1

Multiparametric Western Blot Analysis

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The antibodies anti-pAKT Ser473 (#4060), anti-pAKT thr308 (#9275), anti-AKT (#4691), anti-pS6 S235/236 (#4858), anti-pS6 S240/244 (#5364), anti-S6, anti-pERK1/2 Thr202/Tyr204 (#9101), and anti-ERK1/2 (#4695) were from Cell Signaling Technology. Anti-LC3B was obtained from Sigma-Aldrich (L8918). KI67 was purchased from Vector laboratories (#VP K451). Anti-Actin was from MP Biomedicals (691001). Novartis Pharma AG (Basel, Switzerland) provided BYL719 and AEW541. LDE225, MK2206, AZD6482,AZD6738, GDC0032, PHA-665752, 17-AAG, LEE011, LY2835219, LBH589, ABT737 and Navitoclax were purchased from Selleckchem (Houston TX, USA). TUNEL- TREVIGEN, cat no-4815-30-K).
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2

Humanized Monoclonal Antibodies and IGF1R Inhibitors

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MK-0646 (Dalotuzumab; Merck, Sharp and Dohme Ltd., Whitehouse Station, NJ, USA) and A12 (Cixutumumab; ImClone Systems, New York, NY, USA) are humanized IgG1 monoclonal antibodies antagonist to the human IGF1R [60 (link), 61 (link)]. The antibodies were diluted in 20 mM histidine and 150 μM NaCl and used at a concentration of 10 mg/ml. AEW541 (Novartis Pharma, Basel, Switzerland) and AG1024 (Sigma-Aldrich Ltd, St. Louis, MO, USA) are selective IGF1R tyrosine kinase inhibitors. AEW541 and AG1024 were kept as a stock solution (10 mM) in DMSO and stored at –20° C. AEW541 is a reversible, ATP-competitive phosphorylation inhibitor that exhibits high selectivity towards IGF1R over insulin receptor [62 (link)]. AG1024 belongs to the tyrphostin family of tyrosine kinase inhibitors [63 (link)].
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3

Ewing Sarcoma Cell Line Characterization

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All cell lines were cultured at 37°C in a humidified atmosphere containing 5% CO2. A673, SKNEP1, SKNMC, and the SKPNDW lines were grown in Dulbecco’s Modified Eagle’s Media (Life Technologies) supplemented with 10% fetal bovine serum (FBS) (Sigma-Aldrich). A673 cells were supplemented with 1 mmol/L of sodium pyruvate (Life Technologies). The CADOES1 and TC32 lines were cultured in RPMI1640 (Sigma-Aldrich) with 15% and 10% FBS, respectively. All cells were grown in the presence of 10 units/mL of penicillin, 10 μg/mL streptomycin and 30 μg/mL of L-Glutamine, PSQ (Thermo Fisher Scientific). Whole exome sequencing, RNA sequencing and STR genotyping of all Ewing sarcoma cell lines used in these studies and validated cell line identity.(20 (link)) Cell lines were regularly tested for Mycoplasma by PCR (Sigma Aldrich). All cell lines were passaged between 4–12 weeks between thawing and use in the described experiments. All cell lines were a kind gift from Todd Golub (Broad Institute, Cambridge, MA), Nathanael Gray (Dana-Farber Cancer Institute, Boston, MA). Ewing sarcoma cell lines were treated with the CDK4/6 inhibitor ribociclib and the IGF1R inhibitor AEW541 kindly provided by Novartis Oncology. Palbociclib (Cat. No S1116), linsitinib (Cat. No S1091), and GDC0941 (Cat. No S1065) were obtained from Selleck Chemicals. THZ1 was a kind gift from Nathanael Gray.
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4

Investigating Signaling Pathways with Antibodies

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Antibodies used in this study were anti-pAKT Ser473, anti-AKT, anti-pS6 Ser235/236, anti-S6, anti-pPRAS40 Thr246, anti-pERK1/2 Thr202/Tyr204, anti-ERK1/2, anti-p110α, anti-p110β, anti-PTEN, anti-IRS1 (Insulin receptor substrate), anti-poly (ADP-ribose) polymerase (anti-PARP), and anti-cleaved PARP from Cell Signaling Technology (Danvers, MA, USA), anti-phosphotyrosine 4G10 and anti-p85 from Millipore (Billerica MA, USA) anti-pIGF1R/IR Tyr1162/1163 from Biosource (ThermoFisher Scientific, Waltham MA, USA) and anti-IRS2 from Novus Biological (Littleton CO, USA). BYL719, AEW541, RAD001, and MEK162 were provided by Novartis Pharma AG (Basil, Switzerland). MK2206, AZD6482, GSK2334470, CAL101, and BMS354825 were purchased from Selleckchem (Houston TX, USA). All compounds used in vitro were dissolved in dimethyl sulfoxide (DMSO).
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