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Western Blotting of Synaptic Proteins

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Antibodies used for western blotting were as follows: anti-Flag M2 (1:10000, Sigma-Aldrich, St. Louis, MO, USA); anti-NSF (1:500, Cell Signaling, Danvers, MA, USA); anti-LRRK2 (1:1000, C41-2, Abcam, Cambridge, UK); anti-Synaptobrevin, anti-synaptophysin and anti-Synaptotagmin 1 (1:1000, Synaptic System, Göttingen, Germany).
Between 10 and 20 μg of protein samples were dissolved in 4–20 % Tris-glycine polyacrylamide gels (Biorad) in SDS/Tris-glycine running buffer. Precision Plus molecular weight markers (Biorad) were used for size estimation. Solubilized proteins were then transferred to polyvinylidenedifluoride (PVDF) membranes in transfer buffer containing 10 % methanol. The PVDF sheets were blocked in Tris-buffered saline plus 0.1 % Triton (TBS-T) plus 5 % nonfat dry milk for 1 h at 4 °C and then incubated overnight at 4 °C with primary antibody in TBS-T plus 5 % non-fat dry milk. The PVDF membranes were washed in TBS-T (3 × 10 min) at room temperature (RT) followed by incubation for 1 h at RT with horseradish peroxidase-conjugated anti-mouse IgG. Blots were then washed in TBS-T (4 × 10 min) at RT and rinsed in TBS, and immunoreactive proteins were visualized using enhanced chemiluminescence plus (ECL+, GE Healthcare, Waukesha, WI, USA). Densitometric analysis was carried out using Image J software.
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2

Antibodies and Mouse Model for LRRK2

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Antibodies for LRRK2 [MJFF2 (C41-2)] (# ab133474), phospho-S935-LRRK2 [UDD2 10 ( 12)] (#ab133450), phospho-T73-Rab10 [MJF-R21] (# ab230261), Rab10 [MJF-R23] (# ab237703), and RPL10a (# ab55544) were from Abcam. Anti-tyrosine hydroxylase was from Millipore (#AB1542). Antibodies for eIF2B5(sc-28854), eIF2α (sc-11386), phospho-eIF2α-S52 (sc-101670), eIF4G3 (sc-100732), and Ndufs3 (sc-292169) were from Santa Cruz Biotechnology. Anti-Rab8 (#R66320) and Rab4 (#R68520) were from BD Transduction Laboratories. Anti-4E-BP1 (# 9452), eEF2 (#2332) and phospho-eEF2(T57) (#2331) were from Cell Signaling Technology and anti-actin (# A3853) was from Sigma-Aldrich. LRRK2-IN1 was from Merck Millipore (# 438193), GSK-2578215A (#4629) and MLi-2 (# 5756) were from Tocris Bioscience. Miglyol 812N was from Cemer Oleo, GmbH, and Co, KG (Germany). Patient cells were from the National Institute of Neurological Disorders and Stroke (NINDS) repository at the Coriell Institute for Medical Research and the Cell Line and DNA Biobank from Patients Affected by Genetic Diseases, Telethon Network of Genetic Biobanks (TNGB) (project no. GTB12001). 23 C57BL/6-Lrrk2 tm1.1Mjff /J mice developed by Michael J. Fox Foundation 24 were obtained from The Jackson Laboratory (Stock no. 016121).
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