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19 protocols using zb 5ms column

1

GC-FID Analysis of Fatty Acid Compounds

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GC with flame-ionization detector (FID) was used for quantitative assessment of the FA-derived compounds. The separations were performed on a Zebron ZB-5ms column (30 m × 250 μm I. D. × 0.25 μm film thickness, Phenomenex) using a 6890 gas chromatograph (Agilent Technologies) with following parameters: helium carrier gas, 250°C injector temperature, and 1 mL.min−1 column flow. The following oven temperature program was used: 100°C (held for 1 min), ramp to 285°C at a rate of 4 °C.min−1 and a second ramp to 320°C at a rate of 20 °C.min−1 with a final hold for 5 min at 320°C. The analytes were detected in FID at 300°C using a makeup flow of 25 mL.min−1 (nitrogen), hydrogen flow of 40 mL.min−1, air flow of 400 mL.min−1 and acquisition rate of 5 Hz. The collected data were processed in Clarity (DataApex).
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2

GC-MS Analysis of Crude DCM Extract

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GC-MS analysis was carried out by the method described by Napagoda et al. [30 (link)]. Dried crude DCM extract was dissolved in ethyl acetate (1 mg/mL) and analyzed on a gas chromatograph HP6890 (Agilent, Santa Clara, CA, USA) connected to an MS02 mass spectrometer from Micromass (Waters, Manchester, UK) with EI 70 eV using ZB5ms column (30 m × 0.25 mm, 0.25-μm film thickness; Phenomenex). The carrier gas was helium at a flow rate of 1 mL/min. The injector temperature was kept at 250 °C and the temperature program was set as 100 °C (2 min), 15 °C/min to 200 °C, 5 °C/min to 305 °C (20 min).
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3

GC-NICI-MS Analysis of Fatty Acids

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The measurements with the NICI source were performed using a Shimadzu QP2010 Ultra from Shimadzu Deutschland (Duisburg, Germany) equipped with an AOC-20i Autoinjector from Shimadzu Deutschland, and a Zebron ZB-5MS column (30 m × 250 μm × 0.25 μm) from Phenomenex (Aschaffenburg, Germany) which has the same/similar stationary phase chemistry compared to the DB-5 column. The same GC parameters as for the Agilent GC-System described above were used. The NICI was operated with methane as the reaction gas and a source temperature of 280 °C. All measurements were performed in negative ionization and SIM mode with the m/z ratio of the [M-PFB] ions. The m/z values of 75 different biologically relevant FAs covered by the method can be found in Table S1 in the ESM.
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4

GC-MS Analysis of Organic Compounds

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Chromatographic analyses were performed using an Agilent 7890B (Bydgoszcz, Poland), equipped with a split/splitless injector and multipurpose autosampler, and an Agilent 5977B mass-selective detector. The GC was fitted with a ZB-5-MS column (Zebron, Phenomenex Inc., Torrance, CA, USA), 30 m × 0.25 mm 0.25 µm, containing (5% phenyl)-methylpolysiloxane.
The injector port was held at 270 °C and used in the split mode (5:1), and 1 µL injections were made. The temperature program used for the analysis was as follows: 80 °C (2 min), ramped at 15 °C/min to 250 °C, and held for 15 min. Helium was used as the carrier gas at a flow rate of 1 mL min−1.
Full-scan mass spectra were recorded with an m/z range of 50–400 in electron-impact mode at 70 eV.
The transfer line and ion source temperatures were set at 280 and 230 °C, respectively. The scan rate was 2.9 scan/s, with a cathode delay time of 5 min. The SCAN mode was used for identification of analytes.
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5

GC-MS Analysis of Chemical Compounds

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Compounds were identified by gas chromatography-mass spectrometry (GC-MS) analysis. The mixture was separated using ZB-5ms column (Phenomenex) and then the single constituents were identified using GC-MS-QP2010 SE mass spectrometer (Shimadzu). The injection volume was 1 µL (split ratio 200:1) and the oven temperature profile was as follows: 50 °C for 2 min followed by an increase of 4 °C min−1 to 280 °C; 280 °C for 2 min; an increase of 40 °C min−1 to 320 °C; 320 °C for 5 min. Helium with the flow of 2 mL min−1 was used as the carrier gas.
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6

GC-MS Analysis of Volatile Compounds

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Volatile constituents were analyzed by Shimadzu GC-MS QP 2010 (Shimadzu Corporation, Kyoto, Japan) fitted with AOC 5000 autoinjector system, and operated in the EI mode at 70 eV, equipped with ZB-5MS column, (Phenomenex, USA). The following conditions were maintained: the initial temperature at 70°C for 3.0 min, ramped at 4.0°C/min to 220°C, and held for 5.0 min. Helium gas was used as a carrier at a flow rate of 1.05 mL/min. The sample volume 1.0 μL was injected in split mode ratio (1:10). The injector and detector temperature were set at 240°C and 250°C, respectively. The identity of each compound was assigned by comparing their relative retention index (RRI) relative to the n-alkane mixture (C9-C24). Compounds were also characterized by a comparison of their spectra with those available from MS libraries such as National Institute of Standards and Technology (NIST) database (McLafferty, 2000 ).
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7

GC-MS Analysis of Asteraceae Oils

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The Asteraceae essential oils were analyzed by GC–MS using a Shimadzu GC–MS-QP2010 Ultra fitted with a Phenomenex ZB-5ms column as previously described [104 (link)]. Identification of the essential oil components was determined by comparison of their retention indices, determined with respect to a homologous series of n-alkanes and their mass spectral fragmentation patters with those from available databases (Adams [105 ], NIST17 [106 ], and FFNSC 3 [107 ]) or in our in-house library [108 ].
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8

GC Analysis of Organosilicon Compounds

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The GC measurements were performed on a Shimadzu GC Plus 2010, equipped with an autosampler (AOC 20i) and a Zebron ZB-5ms column (Phenomenex, L = 30 m, ID = 0.25 mm, df = 25 μm, 5% polysilarylene + 95% polydimethylsiloxane; temperature range: 60 to 325/350 °C). The starting temperature was set to 50 °C and kept constant for 2 min. Subsequently, the column was heated to 300 °C at 15 K min−1 and kept at 300 °C for 5 min. The overall measurement time was 23 min and nitrogen was used as the carrier gas (purity: 5.0, 1.6 mL h−1). The following retention times (Rt) were observed: Rt(dimethylphenylsilane) = 6.5 min, Rt(undecane) = 8.4 min and Rt(butoxydimethylphenylsilane) = 10.6 min (Fig. S6).
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9

Sesquiterpene Quantification by GC-MS

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Sesquiterpene quantification was performed with GC‐MS. The chloroform: methanol: acetone 2:1:0.5 (v/v/v) extracts were dried by passing them through a Pasteur pipette filled with anhydrous sodium sulphate (Sigma‐Aldrich). Samples were analysed on an Agilent 7890A gas chromatograph connected to a 5795C mass selective Triple‐Axis Detector (Agilent Technologies, United States). For that purpose, 1 μL of extract was injected at 250 °C in splitless mode on a ZB‐5MS column (Phenomenex, 30 m × 0.25 mm; ID 0.25 μm) with 5 m guard column with a constant flow of helium at 1 mL/min. The oven was programmed for 1 min at 45 °C and then subsequently ramped at 10 °C/min to 300 °C and kept for a final time of 5 min with a solvent delay of 5.5 min. The ionization potential was set at 70 eV, and scanning was performed from 45 to 400 atomic mass units, with a scanning speed of 3.99 scans/sec. Quantification was performed with an external calibration curve from α‐bisabolol (Sigma‐Aldrich). The Henry's law constants were calculated with the HENRYWIN program available online (https://www.epa.gov/tsca-screening-tools/epi-suitetm-estimation-program-interface) at 25 °C [HENRYWIN v3.10] Bond Method.
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10

Hydrolysis and GC-MS Analysis Protocol

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The hydrolysis reaction was performed according to a previous study [17 (link)]. Compound 3 or 4 (1 µg) was hydrolyzed with 40 µL of 2 mol/L TFA at 100 °C for 2 h. The hydrolysate mixture was concentrated to dryness in vacuo. The residue was trimethylsilylated with 50 µL of BSTFA + TMCS (99:1) at 70 °C for 3 h. The trimethylsilylated sample (2 µL) was subjected to GC-MS analysis. GC separation was carried out on a Zebron ZB-5MS column (30 m × 0.25 mm i.d., 0.25 µm film thickness, Phenomenex) under the following conditions: injector temperature, 280 °C; carrier gas, helium; and flow rate, 1.0 mL/min. The temperature program of the column oven was set to hold at 70 °C for 1 min, then increase at 10 °C/min to 300 °C, and finally hold at 300 °C for 3 min. The conditions used for the mass spectrometer were as follows: ionization mode, EI (70 eV); ion source temperature, 200 °C; scan range, m/z 61–760; and scan rate, 1 s/scan.
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