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6 protocols using anti mouse alexa fluor 488

1

Immunostaining of Drosophila Brain

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Three- to 5-day-old adult flies were fixed in 4% paraformaldehyde for 3 hr at 4°C. Brains were dissected, blocked in 5% normal donkey serum, incubated with anti-FasII, 1D4 (DSHB), or anti-HA at 4°C for 2 days and then incubated with anti-mouse Alexa Fluor 488 (Cell Signaling) for 16 hr. Brains were mounted in Vectashield and imaged on a Leica TCS SP5 confocal microscope. Western blots were carried out as previously described (Liu and Secombe, 2015 (link)).
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2

Immunofluorescence Assay for p65, FLAG, and GST

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MCF10A cells seeded on glass coverslips in 24-well plates (5.0 × 104 cells per well) were transfected as described above. Twenty-four hours after transfection, or after TNFα addition when stated, cells were fixed for 10 min in 4% paraformaldehyde (PFA). Coverslips were then sequentially incubated with PBS-Triton X-100 for 5 min, and with antibodies against p65 (SantaCruz Biotechnology #sc-372), FLAG (Sigma-Aldrich #F1804) or GST (Sigma-Aldrich #G7781) diluted in PBS–BSA 3% for 1 h. Secondary antibodies anti-rabbit-AlexaFluor-555 (Cell Signaling #4413) and anti-mouse-AlexaFluor-488 (Cell Signaling #4408) were next incubated in PBS–BSA 3% for 1 h. Nuclei were stained with DAPI and coverslips were mounted with Vectashield medium (Vector Laboratories, Cambridgeshire, UK). Results are presented as a representative example of three biologically independent repetitions of the experiment.
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3

hDPSCs Immunofluorescence Analysis

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hDPSCs were seeded (2 × 104 cells/mL) 6-well plates, in DMEM-L containing serum and antibiotics. Twenty-four hours after seeding, hDPSCs untreated or treated with siRNA PrP or scrambled for 72 h were stimulated with recPrPC for 14 days and tested for immunofluorescence analysis. Briefly, hDPSCs untreated or treated as above were fixed with 4% paraformaldehyde and permeabilized by 0.1% (v/v) Triton X-100. After washing, cells were incubated with mouse anti-B3-Tubulin mAb, mouse anti-NFH mAb (Cell Signaling Technology Danvers, MA, USA) and mouse anti-GAP43 mAb (Sigma-Aldrich, Milan, Italy) for 1 h at 4 °C, followed by anti-mouse alexa fluor 488 or anti-mouse alexa fluor 594 (Cell Signaling Technology Danvers, MA, USA) for additional 30 min. Finally, cells were observed with a Zeiss Axio Vert. A1 fluorescence microscope (Zeiss, Oberkochen, Germany).
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4

Immunofluorescent Imaging of Transfected HEK293T Cells

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HEK293T cells were grown and transfected on poly-D-lysine-coated coverslips. Cells were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 10 min at room temperature. They were then washed with PBS 3 times for 5 min each and permeabilized with 0.1% Triton X-100 in PBS for 15 min. Following three five-minute washes in PBS, cells were blocked with 5% bovine serum albumin (BSA) for 45 min. Incubation with primary antibodies (RP3-CPO from Triple Point Biologics, 1:1000 dilution; mouse HA-tag (6E2) antibodies from Cell signaling Technology, 1:1000 dilution) diluted in 5% BSA in PBS was performed for one hour at room temperature. After three five-minute washes in PBS, secondary antibodies (anti-rabbit Alexafluor-555 and anti-mouse Alexafluor-488 from Cell signaling technology, 1:1000 dilution) were added and incubated for one hour. Following three five-minute washes in PBS, coverslips were inverted on 8 μl of aqueous mounting medium (PBS containing 1 mg/ml p-phenylenediamine and 1 μg/ml DAPI) and sealed with nail polish. Imaging was performed on a Keyence BZ-X810 fluorescence microscope.
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5

Immunofluorescence Analysis of A549 Cells Infected with P. brasiliensis

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After A549 epithelial cells were cultured on glass coverslips (12 mm) for 72 h and infected with yeasts of P. brasiliensis, cells were washed three times with PBS, fixed with paraformaldehyde 4% for 20 min, incubated with 50 mM ammonia chloride for 20 min and with PGN/saponin (PBS containing 0.25% gelatin, 0.1% saponin, and 0.1% azide) for 1 h. Subsequently, the coverslips were incubated with the primary antibodies anti-α3 integrin, anti-Rab5 or anti-LAMP-1, diluted 1:50 in PGN/saponin for 2 h at room temperature. The coverslips were then incubated with secondary antibodies conjugated to fluorophores: anti-mouse Alexafluor 488 (#4408S Cell Signaling Technology, Danvers, MA, USA) or Alexafluor 555 anti-rabbit (#4413S Cell Signaling Technology, Danvers, MA, USA). DAPI (4′,6-diamidine-2-phenylindole) (Sigma–Aldrich/Merck, Burlington, MA, USA) was used for nuclear staining and Calcofluor (Sigma–Aldrich/Merck, Burlington, MA, USA) for the staining of the P. brasiliensis wall. The coverslips were mounted on glass slides with SlowFade® (S36937, Invitrogen, Waltham, MA USA), and the fluorescence was analyzed with an epifluorescence microscope (Olympus BX51, Tokyo, Japan). Images were taken with the Olympus DP71 camera. Colocalization of α3 integrin and Rab5 or LAMP-1 was analyzed using Image J software (National Institutes of Health, Bethesda, MD, USA).
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6

Comprehensive Immunostaining Assay Protocol

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Primary antibodies, Anti‐GAD1 (#41 318), Anti‐NeuN (#94 403), Anti‐β‐Actin (#3700), Anti‐PSD95 (#36 233), Anti‐Caspr2 (#3731), Anti‐nNOS (#4231), Anti‐synaptophysin (#36 406) and secondary antibodies, Anti‐Rabbit Alexa fluor 594 (#8889), Anti‐mouse (Alexa Fluor 488 (#4408), HRP‐conjugated anti‐rabbit (7076S), HRP‐conjugated anti‐mouse (7074S), ProLong gold Antifade with DAPI (#8961), and protease phosphatase inhibitor cocktail (#5872) were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti‐3Ntyr antibody (ab110282), Anti‐homer 1 (ab184955), Anti‐NMDAR1 antibody (ab109182), Anti‐SLC32A1/VGAT antibody (1b235952), and anti‐MAP2 (ab11268) were purchased from Abcam, Cambridge, UK. Anti‐Shank3 (sc‐377088) was purchased from Santa Cruz Biotechnology, Dallas, TX, USA. Other general chemicals were purchased from Sigma Aldrich (St. Louis, MO, USA) and Bio‐Rad Laboratories (Haifa, Israel).
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