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181 protocols using te300

1

Hydrocoel Morphology Observation Protocol

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For observations of the overall shape of hydrocoel, larvae were fixed using Fix1 (4% PFA/0.1 M MOPS, pH 7.0/0.5 M NaCl)29 (link)). Specimens were stained with DAPI (Nakalai Tesque, Kyoto, Japan) to observe the overall morphology of the hydrocoel. For observations of cell arrangements and cell shapes, N-(4,4-Difluoro-5,7-Dimethyl-4-Bora-3a,4a-Diaza-s-Indacene-3-Pentanoyl) sphingosine (BODIPY FL C5-Ceramide) (Life Technologies, Carlsbad, CA, USA) was used. Larvae were kept alive in BODIPY FL C5-ceramide (100 μM in sea water) for 6 h at 20 °C. Based on a previous study30 (link), specimens were embedded on glass bottom dishes using 1% low-temperature melting agarose. The specimens were then observed using a confocal laser scanning microscope (FV3000, Olympus, Tokyo, Japan) and an optical microscope (TE300 Nikon, Tokyo, Japan) equipped with a camera (DP27, Olympus, Tokyo, Japan).
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Hydrocoel Observation in Marine Larvae

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For observations of the overall shape of hydrocoel, larvae were xed using Fix1 (4% PFA/ 0.1M MOPS, pH 7.0/ 0.5M NaCl) 33 ). Specimens were stained with DAPI (Nakalai Tesque, Kyoto, Japan) for observation of the overall morphology of the hydrocoel. For observations of cell arrangements and cell shapes, N-(4,4-Di uoro-5,7-Dimethyl-4-Bora-3a,4a-Diaza-s-Indacene-3-Pentanoyl) Sphingosine (BODIPY FL C 5 -Ceramide) (Life Technologies, Carlsbad, CA, USA) was used. Larvae were kept alive in BODIPY FL C 5 -Ceramide 100 μM in sea water, for 6 hours at 20 °C. Based on a previous study 34 , specimens were embedded on the glass bottom dish using 1% low temperature melting agarose. The specimens were then observed using a confocal laser scanning microscope FV3000, Olympus, Tokyo, Japan and an optical microscope (TE300 Nikon, Tokyo, Japan) equipped with a camera (DP27, Olympus, Tokyo, Japan).
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Evaluating Cumulus Cell Expansion and Oocyte Maturation

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Following IVM, the score of cumulus cell expansion was evaluated subjectively, as previously described [20 (link)]: no response, 0; minimum observable response in which the cells in the outermost layer of the cumulus became round and glistening, 1; expansion of outer cumulus cell layers, 2; expansion of all the cumulus cell layers except the corona radiata, 3; and expansion of all the cumulus cell layers including the corona radiata, 4. After analyzing the cumulus cell expansion, COCs were denuded by repeated pipetting in TLH containing 0.4% (w/v) BSA (TLH-BSA) and 0.1% (w/v) hyaluronidase, followed by staining with 5 µg/mL Hoechst 33342 in TLH-BSA for 15 min. The nuclear maturation of IVM oocytes was evaluated under fluorescence microscope (TE300; Nikon, Japan), according to the method described in a previous study [21 (link)].
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4

Measuring Oocyte Morphology in IVM

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Following IVM, images of denuded metaphase II (MII) oocytes in each experimental group were recorded using a digital camera (DS-L3; Nikon) attached to an inverted microscope (TE300; Nikon). The size of each part of the matured oocyte was measured using ImageJ software (version 1.49q; National Institutes of Health, USA), and sizes of the PVS and cytoplasm were calculated as described previously [22 (link)]. Briefly, mean diameters of oocytes were calculated by averaging the longest and the shortest diameters of each oocyte. The PVS size was calculated by subtracting the diameter of ooplasm from the inner diameter of zona pellucida.
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5

Bovine Embryo Development Protocol

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After electrical activation, the PA embryos were exposed to 5 µg/mL CB and SCNT embryos with 0.4 µg/mL demecolcine combined with 1.9 mM 6-dimethylaminopurine in IVC medium for 4 h. The SCNT and PA embryos were subsequently washed three times in fresh IVC medium, transferred into 30-µL IVC droplets under mineral oil, and cultured at 39°C in a humidified atmosphere of 5% CO2, 5% O2, and 90% N2 for 7 days. Cleavage and blastocyst formation were evaluated on Days 2 and 7, respectively, with the day of SCNT or PA designated as Day 0. Count of total cell number per blastocyst was conducted using Hoechst 33342 staining under an epifluorescence microscope (TE300; Nikon).
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6

Multicolor Imaging Microscopy System

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A fast monochromator (Polychrome II; Till Photonics, Inc., Germany) was used as an excitation light source. A fused quartz light guide was used to divert the excitation light to an inverted microscope (TE-300; Nikon, Tokyo, Japan). An oil immersion lens (40x, NA 1.3) was used. A near infrared filter (Chroma Technology Corp., Bellows Falls, VT, USA) was used between the microscope illuminator and specimen to monitor the object field with a charge-coupled device (CCD) camera (FTM1800NH/HGI; Philips, Salt Lake, USA). The image was captured with a BT878-based TV capture board, and the object field or cell area, as a pixel unit, was measured with custom-made software. The object field area was set with a field diaphragm (Nikon, Tokyo, Japan). Four photomultiplier tubes (PMTs) were used to detect emission wavelengths, and each had band-pass filters (450, 500, 590, and 640 nm). Dichroic mirrors and band-pass filters were purchased from Chroma (Brattleboro VT, USA). A photon counting method was applied with the combination of a photomultiplier tube (R2949; Hamamatsu, Hamamatsu Japan), photon counter unit (C3866; Hamamatsu, Hamamatsu, Japan), and high-speed counter (NI 6602; National Instruments, Austin, USA). Custom-made driving software was used to control and sample data. A diagram of the whole system is shown in Fig. 1.
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7

Oocyte Maturation Staging via Hoechst Staining

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Matured oocytes were stained with 10 µg/mL Hoechst 33342 dye, and nuclear maturation was assessed using a fluorescence microscope (TE300, Nikon, Tokyo, Japan) and a micromanipulator (NT-88-V3, Narishige, Japan). Nuclear maturation was evaluated by classifying cells into four stages (germinal vesicle, metaphase I, anaphase and telophase I, and metaphase II).
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8

Microfluidic Droplet Formation Protocol

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Fluorinated oil with surfactant, gel bead solution and nanovial solutions were added into the reservoirs of the 10X Genomics Chip G. 3 mL syringes (Becton Dickinson) were connected to the bead and sample inlet reservoirs via PEEK tubing (IDEX) and a coupler molded out of PDMS. Syringe pumps (PhD 2000, Harvard Apparatus) were used to inject air into the reservoirs and pressurize the bead and sample inlets and drive flow. Droplet formation videos were recorded using an inverted microscope (Nikon TE300) equipped with a high-speed camera (ZWO ASI144MM).
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9

Xenograft Tumor Model in Nude Mice

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The nude mice used in this study were treated following the experimental animal ethics guidelines issued by the China Medical University. The study was approved by the Institutional Animal Research Committee of China Medical University. Four-week-old female BALB/c nude mice were purchased from Charles River (Beijing, China), and the axilla or tail vein of each mouse was subcutaneously or intravenously inoculated with 5×106 or 2×106 tumor cells, respectively, in 0.2 mL of sterile PBS. Six weeks after inoculation, mice were euthanized and autopsied to examine tumor growth and dissemination. A portion of tissue from the tumor and each organ was fixed in 4% formaldehyde (Sigma) and embedded in paraffin. Serial 4-μm-thick sections were prepared and stained with hematoxylin and eosin (H&E), and the stained sections were examined under a microscope (Nikon TE300, Melville, NY, USA).
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10

Temperature-controlled Live-cell Imaging

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Cells were placed in a temperature-controlled chamber (PDMI-2, Harvard Apparatus, Holliston, MA) mounted on the stage of an inverted microscope (Nikon TE300) and recorded using the methods and protocols specified in the Online Supplement.
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