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47 protocols using automated immunostainer

1

Immunohistochemical Detection of PrP^CWD

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Immunohistochemistry (IHC) was conducted at NVSL using the standard operating procedures for detecting PrPCWD as previously described [6 (link)]. Briefly, 5 μm tissue sections were mounted on positively charged glass slides (Fisher Scientific), oven dried, treated with formic acid, rinsed with Tris buffer (pH 7.5), and subjected to hydrated autoclaving using DIVA antigen retrieval solution (Biocare Medical) and a decloaking chamber (Biocare Medical). Immunostaining was carried out using an automated immunostainer and associated reagents (Ventana Medical Systems) as well as the Anti-Prion (99) Research Kit, RTU (Ventana Medical Systems). The main reagents of these kits included decloaker solution, antibody block, monoclonal antibody F99, alkaline phosphatase-conjugated anti-mouse IgG secondary antibody, fast red chromogen, and hematoxylin. Each automated run included tissue controls from CWD-infected and non-infected deer.
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2

Immunohistochemical Analysis of CWD Prion Deposition

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Formalin-fixed, paraffin-embedded tissues were sectioned at 5-um thickness and stained with hematoxylin and eosin or by IHC as previously described [43 (link)]. Antigen retrieval was achieved by autoclaving in citrate buffer solution (DAKO Target Antigen Retrieval) and IHC for PrPCWD was performed on an automated immunostainer (Ventana Medical Systems) using the monoclonal antibody F99/97.6.1 (VMRD) and Ultraview Red detection kit (Ventana Medical Systems). Positive and negative staining were differentiated based on comparisons with positive and negative deer control tissues included in each run, and negative control tissues showed no immunoreactivity. The extent of PrPCWD deposition in obex sections was graded (- to ++++) using previously published criteria [31 (link)].
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3

Automated Immunohistochemistry Protocol

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Immunohistochemistry was performed on an automated immunostainer (Ventana Medical Systems) according to the company’s protocols for open procedures with slight modifications. 5 µm sections were stained with rabbit-anti-human/mouse-CD3 (clone SP7, catalogue number CI597C01, dilution 1:50, DCS-diagnostics) and PAB101 (Tag-specific mouse IgG2a mAb; dilution 1:200; in-house production).
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Immunohistochemical Profiling of EBV+ Cells

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The tissue blocks were cut into 4-μm sections and processed for immunohistochemistry. The lineage of EBV+ cells was determined by staining with antibodies against CD3, CD5, CD4, CD8, CD56, CD30, TIA1, and Ki67. Immunohistochemical stains were performed with an automated immunostainer (Ventana Medical Systems, Tucson, AZ), according to the manufacturer’s protocol. EBV was detected with the EBV Probe In Situ Hybridization Kit (TRIPLEX INTERNATIONAL BIOSCIENCES, CHINA, CO. LTD).
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5

Automated Immunohistochemistry of Murine Tissues

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Immunohistochemistry on murine tissues was performed on an automated immunostainer (Ventana Medical Systems Inc., Oro Valley, AZ) according to the company’s protocols for open procedures with slight modifications. Appropriate positive and negative controls were used to confirm the adequacy of the staining. The histologic samples were analyzed by an experienced pathologist (L. Quintanilla-Martinez). Photomicrographic images were acquired with an Axioskop 2 plus Zeiss microscope equipped with a Jenoptik (Laser Optik System, Jena, Germany) ProgRes C10 plus camera and software. Objectives Plan-Neofluar used were as follows: 1.25/0,035, 2.5×/0.075, 10×/0.30, 20×/0.50, and 40×/0.75. Final image preparation was performed with Adobe Photoshop CS6 (Adobe Inc., San José, CA).
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6

Immunohistochemical Profiling of Lymphomas

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Immunohistochemical staining was performed on formalin-fixed, paraffin-embedded tissue (FFPE). Antigen retrieval and immunohistochemical stains were performed on an automated immunostainer following the manufacturer’s protocol (Ventana Medical Systems, Tuscon, AZ, USA). The following predilute antibodies were used: CD3 (Ventana Medical Systems), BCL2 (Cell Marque, Rocklin, CA, USA), BCL6 (Cell Marque), CD20 (Dako, Carpinteria, CA, USA), PAX5 (Cell Marque), CD10 (Leica, Buffalo Grove, IL, USA), and MUM1 (Leica). Determination for germinal center B cell (GCB) and non-GCB was based on expression patterns for CD10, BCL-6, and MUM1 per Hans et al. criteria [23 (link)]. A GCB phenotype was considered if a case was positive for CD10. A non-GCB phenotype was considered with any of the following expression patterns: CD10BCL6+MUM1+, CD10BCL6MUM1+, and CD10BCL6MUM1. Positive and negative controls were performed with all cases and showed appropriate staining pattern.
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7

Histological Analysis of Bone and Marrow in SLE

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Mouse tibias/femurs and BM core biopsies from SLE patients and controls were fixed in 10% neutral buffered formalin for 1hr and decalcified in Rapid-Cal-Immuno-Decal Solution (BBC Biochemical, Stanwood, WA) for 2hr. Paraffin sections (4-µm) were stained with H&E. For IHC, paraffin sections were dried on slides for 2hr at 60°C. Slides were placed in a Ventana Medical Systems (Tucson, AZ) automated immunostainer and deparaffinized. Heat-induced epitope retrieval was performed with Ventana’s CC1 retrieval solution (30 min at 95–100°C). Primary antibodies anti-cleaved-caspase-3 (Cell Signaling, Danvers, MA), anti-TNFα (Abcam, Cambridge, MA), and anti-CD71 (Dako/Agilent Technologies, Santa Clara, CA) were applied for 32min at 37°C followed by peroxidase- or alkaline phosphatase-conjugated goat anti-mouse or goat anti-rabbit secondary antibodies (30min). Reaction product was visualized using Ultra View DAB (brown) or Alkaline Phosphatase Red detection kit (Ventana). Slides were counterstained with Ventana hematoxylin.
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8

Immunohistochemical Assessment of PD-L1 Expression

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Formalin-fixed, paraffin-embedded tissues were sectioned at a thickness of 4 μm and stained using an automated immunostainer (Ventana Medical Systems, Tucson, AZ, USA) according to the manufacturer’s protocol. The slides were dried at 60 °C for 1 h and deparaffinized at 75 °C for 4 min using EZ Prep (Ventana Medical Systems, Tucson, AZ, USA). The cells were conditioned (heat pre-treatment) at 100 °C for 64 min using a cell conditioning solution that contained Tris/borate/ethylenediaminetetraacetic acid. The anti-PD-L1 22C3 mouse monoclonal primary antibody (Agilent Technologies, Santa Clara, CA, USA) was diluted to 1:50 and applied to the sections, which were then incubated at 37 °C for 32 min. Signals were detected using an Optiview detection kit (Ventana Medical Systems, Tucson, AZ, USA) with streptavidin-biotin staining. Counterstaining was performed for 2 min at room temperature using Mayer’s hematoxylin (ScyTek, Logan, UT, USA). PD-L1 expression was defined if membranous and/or cytoplasmic staining was observed in tumor cells and tumor-associated immune cells. The combined positive score (CPS) was recorded based on the number of PD-L1-positive tumors and immune cells in relation to the total number of tumor cells. PD-L1 positivity was defined as a CPS > 1.
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9

Immunophenotyping and Mutation Analysis of Mast Cells

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Bone marrow trephine biopsy specimens were fixed either in B-5 fixative or B-Plus fixative, embedded in paraffin, and processed by using standard procedures.12 (link) Immunohistochemical studies with anti-tryptase, anti-CD117 (Cell Marque, Hot Springs, Ark), and anti-CD25 (Vision BioSystems, Norwell, Mass) antibodies were performed by using immunoperoxidase staining procedures and an automated immunostainer (Ventana Medical System, Tucson, Ariz), according to the manufacturer's instructions. Bone marrow biopsy specimens were scored in a blinded fashion by a hematopathologist (I.M.). Multiparameter flow cytometry was performed on aspirates for CD2, CD25, CD45, and CD117. The CellQuest program was used for data analysis.12 (link) Detection of the KIT D816V mutation was performed by using RT-PCR/RFLP.12 (link)
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10

Immunohistochemical Evaluation of CD20 and CD79a in Bone Marrow Biopsies

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Bone marrow trephine biopsies were fixed in B-Plus fixative, embedded in paraffin and processed for morphological evaluation using standard procedures. Immunohistochemical studies with anti-CD20 and anti-CD79a antibodies (Ventana Medical System, Tucson, AZ) were performed using immunoperoxidase staining procedures on an automated immunostainer (Ventana Medical System) according to the manufacturer's instructions. Results were assessed semi-quantitatively by two trained hematopathologists on a scale from 0-100%. Images were obtained via digital microscopy using an Olympus BX-51 microscope (Olympus America, Center Valley, PA) equipped with a DPlan 40/0·65 numeric aperture objective and captured using an Olympus DP70 digital camera system.
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