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Matrigel coated dishes

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Matrigel-coated dishes are a type of laboratory equipment used in cell culture applications. Matrigel is a basement membrane extract derived from Engelbreth-Holm-Swarm (EHS) mouse sarcoma cells, which provides a suitable extracellular matrix for the attachment and growth of various cell types. These dishes are pre-coated with Matrigel, offering a simple and convenient substrate for cell culture studies.

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31 protocols using matrigel coated dishes

1

Satellite Cell Isolation and Myoblast Differentiation

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Satellite cell isolation was performed as previously described, and cell culture was performed similarly to past protocols [9 (link),10 (link)]. Satellite cells were plated on BD Matrigel-coated dishes and activated to differentiate into myoblasts in DMEM-F12, 20% fetal bovine serum (FBS), 40 ng/mL basic fibroblast growth factor (R&D Systems, 233-FB/CF), 1× non-essential amino acids, 0.14 mM β-mercaptoethanol, 1× penicillin/streptomycin, and Fungizone. Myoblasts were maintained with 10 ng/mL basic fibroblast growth factor before they were differentiated in DMEM-F12, 2% FBS, 1× insulin–transferrin–selenium, when 85% confluency was reached. They were cultured at 37 °C, 5% CO2 Dulbecco’s modified Eagle’s medium (DMEM; GIBCO) supplemented with 10% fetal bovine serum (FBS; Atlanta Bio selected), and antibiotics-1% penicillin-streptomycin (Gibco, Waltham, MA, USA). Three days after differentiation, myotubes were infected with adenovirus for ntGFP or GFP-Cre for OPA1 deletion at a multiplicity of infection sufficient to infect >95% of the cells with minimal cell death. Adenoviruses were obtained from the University of Iowa Viral Vector Core facility. Experiments were performed between 3 and 7 days after infection for a total of 6 days of differentiation.
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2

Opa1 Deletion in Myotube Differentiation

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Satellite cell isolation was performed as previously described.[47 (link)] Satellite cells from Opa1fl/fl mice were plated on BD Matrigel-coated dishes and activated to differentiate into myoblasts in Dulbecco’s modified Eagle medium (DMEM)-F12 containing 20% fetal bovine serum (FBS), 40 ng mL−1 basic fibroblast growth factor, 1× non-essential amino acids, 0.14 mm β-mercaptoethanol, 1× penicillin/streptomycin, and Fungizone. Myoblasts were maintained with 10 ng mL−1 basic fibroblast growth factor and differentiated in DMEM-F12 containing 2% FBS and 1× insulin–transferrin–selenium when 90% confluency was reached. 3 days after differentiation, myotubes were infected with an adenovirus expressing GFP-Cre to achieve Opa1 deletion. Adenoviruses were obtained from the University of Iowa Viral Vector Core facility. Experiments were performed between 3 and 7 days after infection.
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3

Satellite Cell Differentiation Protocol

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Satellite cell differentiation was performed as described previously (Lam et al., 2021 ; Pereira et al., 2017 (link)). Gastrocnemius muscles were dissected from 8 to 10 week‐old WT mice and washed twice with 1× PBS supplemented with 1% penicillin–streptomycin (Gibco) and Fungizone (300 mL/100 mL). Dulbecco's Modified Eagle Medium/Nutrient Mixture F‐12 (DMEM‐F12) with collagenase II (2 mg/mL), 1% penicillin–streptomycin, and Fungizone (300 mL/100 mL) was added to the muscle which was agitated for 90 min at 37°C. For the second wash, collagenase II was changed to 0.5 mg/mL, and the muscle was agitated for 30 min at 37°C. The tissue was cut, passed through a 70‐mm cell strainer, and after centrifugation, satellite cells were plated on BD Matrigel‐coated dishes. To differentiate cells into myoblasts, a mixture of DMEM‐F12, 20% fetal bovine serum (FBS) (Atlanta Bio selected), 40 ng/mL basic fibroblast growth factor (bFGF, R and D Systems, 233‐FB/CF), 1× non‐essential amino acids, 0.14 mM β‐mercaptoethanol, and 1× penicillin–streptomycin, and Fungizone was used. Myoblasts were maintained with 10 ng/mL bFGF, and when cells reached 80% confluence, myoblasts were differentiated in DMEM‐F12, 2% FBS, 1× insulin–transferrin–selenium medium. Cells were cultured at 37°C with 5% CO2 in DMEM (GIBCO) supplemented with 10% FBS and 1% penicillin–streptomycin.
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4

Satellite Cell Isolation and Culture

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Satellite cell isolation was performed as previously described (38 (link)). Satellite cells from Sam50fl/fl mice were plated on BD Matrigel-coated dishes and activated to differentiate into myoblasts in Dulbecco’s modified Eagle medium (DMEM)-F12 containing 20% fetal bovine serum (FBS), 40 ng/ml basic fibroblast growth factor, 1× non-essential amino acids, 0.14 mM β-mercaptoethanol, 1× penicillin/streptomycin, and Fungizone. Myoblasts were maintained with 10 ng/ml basic fibroblast growth factor and differentiated in DMEM-F12 containing 2% FBS and 1× insulin–transferrin–selenium when 90% confluency was reached. Three days after differentiation, myotubes were infected with an adenovirus expressing GFP-Cre to achieve Sam50 deletion. Adenoviruses were obtained from the University of Iowa Viral Vector Core facility. Experiments were performed between 3 and 7 days after infection.
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5

Satellite Cell Isolation and Differentiation

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Satellite cell isolation and differentiation were performed as described previously with minor modifications (Hindi et al., 2017 (link)). Briefly, gastrocnemius and quadriceps muscles were excised from Lrrc8aflfl mice (8–10 weeks old) and washed twice with 1XPBS supplemented with 1% penicillin-streptomycin and fungizone (300 µl/100 ml). Muscle tissue was incubated in DMEM-F12 media supplemented with collagenase II (2 mg/ml), 1% penicillin-streptomycin and fungizone (300 ul/100 ml) and incubated at shaker for 90 min at 37°C. Tissue was washed with 1X PBS and incubated again with DMEM-F12 media supplemented with collagenase II (1 mg/ml), dispase (0.5 mg/ml), 1% penicillin-streptomycin and fungizone (300 µl/100 ml) in a shaker for 30 min at 37°C. Subsequently, the tissue was minced and passed through a cell strainer (70 µm), and after centrifugation; satellite cells were plated on BD Matrigel‐coated dishes. Cells were stimulated to differentiate into myoblasts in DMEM‐F12, 20% fetal bovine serum (FBS), 40 ng/ml basic fibroblast growth factor (bfgf, R and D Systems, 233‐FB/CF), 1X non‐essential amino acids, 0.14 mM β‐mercaptoethanol, 1X penicillin/streptomycin, and Fungizone. Myoblasts were maintained with 10 ng/ml bfgf and then differentiated in DMEM‐F12, 2% FBS, 1X insulin–transferrin–selenium, when 80% confluency was reached.
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6

Isolation and Differentiation of Murine Satellite Cells

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Satellite cell isolation and differentiation were performed as described previously with minor modifications [10 (link)]. Briefly, the skeletal muscles of gastrocnemius and quadriceps were excised from C57BL/6J wildtype at 8–10 weeks of age. The muscles were washed twice with 1× PBS supplemented with 1% penicillin-streptomycin and fungizone (300 μL/100 mL). DMEM-F12 media with collagenase II (2 mg/mL), 1% penicillin-streptomycin, and fungizone (300 uL/100 mL) was added to the muscles, and the muscles were shaken for 90 min at 37 °C. The tissue washing process was repeated, using DMEM-F12 media, same specifications as before except collagenase II was changed to 0.5 mg/mL, in a shaker for 30 min at 37 °C. Following this, the tissue was cut and passed through a cell strainer (70 μm). Following centrifugation, satellite cells were plated on BD Matrigel-coated dishes. Cells were differentiated into myoblasts through the usage of a mixture of DMEM-F12, 20% fetal bovine serum (FBS), 40 ng/mL basic fibroblast growth factor (bfgf, R and D Systems, 233-FB/CF), 1× non-essential amino acids, 0.14 mM β-mercaptoethanol, 1× penicillin/streptomycin, and Fungizone. Myoblasts were maintained with 10 ng/mL bfgf and then differentiated in DMEM-F12, 2% FBS, 1× insulin–transferrin–selenium, when 80% confluency was reached.
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7

Characterization of DM1 and Control iPSCs

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Human iPSC lines derived from individuals with DM1 and controls have been previously characterized elsewhere (10 (link), 11 (link)). DM1 iPSCs were provided as a gift from the Gottesfield laboratory at the Scripps Institute, whereas control lines were a gift from the Goldstein laboratory at University of California San Diego (UCSD). iPSC colonies were expanded on Matrigel-coated dishes (BD Biosciences) with mTeSR1 medium (STEMCELL Technologies). The cells were routinely checked by karyotype and copy number variation (CNV) arrays to avoid genomic alterations in the culture. Human embryonic kidney 293T cells were purchased from the American Type Culture Collection.
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8

Generation and Characterization of NOVA1 Mutant iPSC Lines

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Two neurotypical iPSC lines and related clones were previously characterized and validated (20 (link), 40 (link)). Human iPSC colonies were expanded on feeder-free conditions on Matrigel-coated dishes (BD Biosciences, San Jose, CA, USA) with mTeSR1 medium (StemCell Technologies, Vancouver, Canada) changed daily. Human edited NOVA1Ar/Ar, NOVA1Ko/Ar, and NOVA1Ko/Ko iPSC lines were generated using the CRISPR-Cas9 genome-editing system to induce a point mutation insertion [Val200→Iso (V200I)] by substituting codon 200 GTA (Val) with ATC (Iso) at both alleles. Then, we used the protocol described elsewhere to generate functional cortical organoids (20 (link)).
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9

Characterization of human iPSC lines

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Three hiPSC lines, WT83C6 (male), CVB (male), and 4C1 (female), were derived from control individuals with informed consent and have been previously characterized elsewhere [28 (link)–30 (link)]. The hiPSC colonies were expanded on Matrigel-coated dishes (BD Biosciences, San Jose, CA, USA) with mTeSR1 medium (StemCell Technologies, Vancouver, Canada). The cells were routinely checked by karyotype and CNV arrays to avoid genomic alterations in the culture. Embryonic samples were obtained from fetal brains (10–11 weeks post-conception (PCW)) and cultured in Neurobasal (Life Technologies, Carlsbad, CA, USA) supplemented with 1X GlutaMAX (Life Technologies), 1% Gem21 NeuroPlex (Gemini Bio-Products, West Sacramento, CA, USA), 1% MEM nonessential amino acids (NEAA; Life Technologies), and 1% penicillin/streptomycin (Pen/Strep; Life Technologies). All cellular cultures were routinely tested for mycoplasma by PCR. The study was approved by the University of California San Diego IRB/ESCRO committee (protocol 141223ZF).
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10

Characterization of iPSC lines and embryonic samples

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iPSC lines derived from control individuals have been previously characterized elsewhere (Nageshappa et al., 2016 (link); Tang et al., 2016 ). iPSC colonies were expanded on Matrigel-coated dishes (BD Biosciences, San Jose, CA, USA) with mTeSR1 medium (StemCell Technologies, Vancouver, Canada). The cells were routinely checked by karyotype and CNV arrays to avoid genomic alterations in the culture. Embryonic samples were obtained from fetus brains and cultured in Neurobasal (Life Technologies, Carlsbad, CA, USA) supplemented with GlutaMAX (Life Technologies), 1% Gem21 NeuroPlex (Gemini Bio-Products, West Sacramento, CA, USA), 1% MEM nonessential amino acids (NEAA; Life Technologies), 1% penicillin/streptomycin (PS; Life Technologies). The study was approved by the University of California San Diego IRB/ESCRO committee (protocol 141223ZF).
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