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5 bromo 2 deoxyuridine brdu

Manufactured by Abcam
Sourced in United Kingdom, United States

5-bromo-2′-deoxyuridine (BrdU) is a synthetic nucleoside that is an analog of the DNA base thymidine. BrdU can be incorporated into the newly synthesized DNA of replicating cells, substituting for thymidine during the DNA synthesis phase of the cell cycle.

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7 protocols using 5 bromo 2 deoxyuridine brdu

1

AdipoRon Administration Protocol for Adult Neurogenesis

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AdipoRon (MedChemExpress, Princeton, NJ, USA) was dissolved in 0.5% carboxymethylcellulose sodium salt (CMC) (Sigma-Aldrich, St. Loius, MO, USA) at 70 °C in 5% DMSO, as previously performed (26). Animals were treated with AdipoRon (20 mg/kg, i.p.) or vehicle (CMC in 5% DMSO). For adult neurogenesis study, 5-bromo-2’-deoxyuridine (BrdU, Abcam, Cambridge, UK) was dissolved in 0.9% saline solution and administered for three consecutive days (100 mg/kg) before AdipoRon treatment.
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2

Cell Proliferation Assays for Transfection Studies

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Cell proliferation assays were performed with WST-1 and BrdU colorimetric assays (both from Roche) according to the manufacturer's protocols. For the WST-1 assay, cells were plated in 96-well plates at an initial density of 2000 cells/well. The growth graphs were made five days after transfection by measuring Formazan dye in the conditioned media. For the quantitative colorimetric BrdU proliferation assay (Roche), BrdU was added 12 hours before fixation. Then, anti-BrdU-POD was added, and the reaction was detected by adding the subsequent substrate. Colorimetric assays were detected with a scanning multiwell spectrophotometer (Bio-Rad). BrdU-incorporated cells were counted five days after transfection. Cells were fixed with 4% paraformaldehyde (PFA) and then subjected to immunofluorescence staining for 5-bromo-2′-deoxyuridine (BrdU) (Abcam). The cells were counted under a fluorescent microscope, and the ratio of BrdU positive nuclei to the total number of nuclei stained with DAPI (Sigma-Aldrich) was determined.
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3

BrdU Labeling of Regenerating Zebrafish Retina

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To assess for regeneration, BrdU labeling was performed to label newly generated cells in the adult zebrafish retina. Prior to collection, adult animals were placed in fish water containing 10 mM 5-bromo-2’-deoxyuridine (BrdU) (Abcam, Cambridge, UK) overnight 1 and 2 weeks before animals were sacrificed. After treatment, animals were rinsed twice for 10 min in fresh fish water to rinse off excess BrdU.
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4

Cytotoxicity and Proliferation Assays

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17β-Estradiol, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazol-3-ium bromide (MTT), 5-Bromo-2’-deoxyuridine (BrdU), and dimethyl sulfoxide (DMSO) were obtained from Abcam (MA, USA) and Promega (WI, USA).
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5

Immunohistochemical Analysis of Neural Markers

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Free-floating sections (40 μm) were washed in 0.1 M PBS, incubated in 0.1 M PBS containing 5% normal donkey serum and 0.3% TritonX-100 for 1 h, and subsequently incubated overnight with primary antibodies (Nox1, Santa Cruz Biotechnology, Santa Cruz, CA, USA, 1:500; GFAP, Millipore, Billerica, MA, USA, 1:500; CD11b, Millipore, Billerica, MA, USA, 1:200; Ki67, Thermo Scientific, Fremont, CA, USA, 1:200; 5-bromo-2′-deoxyuridine (BrdU, Abcam, Cambridge, UK), 1:500; doublecortin (DCX), Santa Cruz Biotechnology, Santa Cruz, CA, USA, 1:500; NeuN, Millipore, Billerica, MA, USA, 1:1000; active caspase-3, Cell Signaling Technology, Inc. Danvers, MA, USA, 1:500) in 2% normal donkey serum (Vector Lab, Burlingame,CA, USA) in PBS at 4°C and incubated in a 1:200 dilution of Alexa Fluor conjugated donkey anti-rabbit (546) or donkey anti-mouse (647) antibodies (Invitrogen, Grand Island, NY, USA) for 1h at room temperature, washed with PBS, and then mounted sequentially in glass slides using Vectashield (Vector Lab, Burlingame, CA, USA). Mounted slices were evaluated for fluorescence under settings for 546 and 647 emissions on a confocal microscope (Olympus, USA).
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6

Comprehensive Neuronal Marker Antibody Panel

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Antibodies against GAPDH, GluA1, GluA2, NeuN, and synaptophysin were from Millipore (Billerica, MA, United States). Antibodies against Bip, Robo2, Sema6A, Synapsin-1, Munc18-1, and 5-bromo-2′-deoxyuridine (BrdU) were from Abcam (Cambridge, United Kingdom). Antibodies against γ-protocadherin (γ-pcdh), Rab3A, Rim1, and Munc13-1 were from Synaptic Systems (Gottingen, Germany). Antibody against Slit2 was from Proteintech (Rosemont, IL, United States). Antibody against TrkB was from Cell Signaling (Danvers, MA, United States). Anti-vesicular glutamate transporter 1 (vGluT1) antibody was a gift from Dr. Masahiko Watanabe (Hokkaido University, Sapporo, Japan). Antibodies against both Mea6 and calbindin were from Sigma-Aldrich (St. Louis, MO, United States). Antibodies to β-tubulin and brain-derived neurotrophic factor (BDNF) were from Santa Cruz Biotechnology (Dallas, TX, United States). Goat anti-mouse and anti-rabbit IgG horseradish peroxidase-conjugated were from Thermo Fisher (Waltham, MA, United States). DAPI and Alexa Fluor-conjugated secondary antibody was from Invitrogen (Carlsbad, CA, United States). Protease inhibitor cocktail was from Roche (Mannheim, Germany). Nissl was from Beyotime (Shanghai, China). Other chemicals were from Sigma unless stated otherwise.
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7

Transplantation and Glucose Homeostasis

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The rats were followed up for 30 days (±2 days) after transplantation for their general condition and correction of hyperglycemia. Rats were considered cured if 2 consecutive glucose measures were below 200 mg/dl. In cured animals and those with partial correction of hyperglycemia, an intravenous glucose tolerance test (IVGTT) was performed on day 28, and the scaffold was removed to confirm recurrence of hyperglycemia. The scaffold was fixed in 4% paraformaldehyde overnight and used for immunohistochemical analyses. 5-bromo-2′-deoxyuridine (BrdU; Abcam, Cambridge, United Kingdom) was injected intraperitoneally (i.p.) on days -4, -3, and -2 relative to the scaffold removal day (dose = 500 mg/kg). In one rat per group, micro-computed tomography (micro-CT) was performed at the study end-point to evaluate the AV bundle, as described later.
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