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123 protocols using dulbecco modified eagle medium (dmem)

1

Pancreatic Cancer Cell Lines and SLC1A5 Knockdown

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Two human pancreatic cancer cell lines (PANC-1 and SW1990) and a normal pancreatic duct epithelia cell line (HPDE6-C7) were purchased from Procell Life Science&Technology (Wuhan, China). PANC-1 cells were cultured in DMEM (Dulbecco’s Modified Eagle Medium) containing 10% FBS (fetal bovine serum) and 1% P/S (penicillin/streptomycin) (Procell, Wuhan, China). SW1990 cells were cultured in Leibovitz’s L-15 medium containing 10% FBS and 1% P/S (Procell, Wuhan, China). HPDE6-C7 cells were cultured in DMEM (Dulbecco’s Modified Eagle Medium) containing 10% FBS and 1% P/S (Procell, Wuhan, China). The culture conditions were 37°C with 5% CO2.
SLC1A5-specific shRNA and amplification plasmids were designed by Hanheng Biotechnology (Shanghai, China). Lentiviruses were also purchased from Hanheng Biotechnology (Shanghai, China) and were applied to transfect cells. The interference efficiency was tested by RT-qPCR after 72 h post-transfection.
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2

Transwell Invasion Assay for Cell Motility

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Cell migration and invasion were investigated by transwell chambers (Millipore). Specially, the chambers were pre‐incubated with Matrigel (Corning) to reveal cell invasive ability. Briefly, cells were homogenized in serum‐free DMEM (Procell) and placed into the upper chambers. DMEM containing 15% FBS (Procell) was added into the lower chambers. After 24 h, the cells were incubated with methanol (Beyotime) and crystal violet (Beyotime), respectively. Results were confirmed by figuring up the number of cells in the lower chambers with an Eclipse Ts2R inverted microscope (Nikon) at a × 100 magnification.
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3

Modulating AhR Signaling in RAW264.7 Cells

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RAW264.7 cells were obtained from ATCC and cultured in DMEM (Procell, Wuhan, China) containing 10% fetal bovine serum (Procell) in an incubator at 37°C and 5% CO2.
RAW264.7 cells were seeded into 6-well plates the day before transfection at a confluency of 70%–80% for transfection experiments. After the cells had grown for 24 h, the medium was changed to serum-free medium. Then, 200 μL of DMEM (Procell) was incubated at room temperature for 20 min with 100 pmol of siAhR pool or siNC (GenePharma, Shanghai, China) and 8 μL of Lipofectamine 2000 (Invitrogen, California, United States) to facilitate complex formation. Subsequently, the cells were cultivated for 48 h at 37°C and 5% CO2 in an incubator. The transfection mixture was gradually added to each well. The cells were then grown in an incubator for 48 h at 37°C with 5% CO2.
The cells were divided into six groups: control, LPS, LPS + NAR, LPS + NAR + siAhR, LPS + NAR + siNC, and LPS + NAR + CH223191. The dosages administered were 1 μg/mL for LPS, 1 μM for CH223191 (Wang et al., 2018 (link)), and 50 μM for naringenin. CH223191 was added 30 min after naringenin was added. The treatments were conducted 24 h later.
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4

Culture of Liver Cell Lines

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The HCC cell lines (Huh7 and Hep3B) were bought from Procell (Wuhan, China) and the human normal liver cell line (THLE-2) was bought from the American Type Culture Collection (ATCC, Manassas, VA, USA). All cells were kept in Dulbecco's modified Eagle's medium (DMEM; Procell) added with 10% fetal bovine serum (FBS; Procell) and 1% penicillin-streptomycin (Procell) at 37°C in a humid incubator consisting of 5% CO 2 .
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5

Measuring Stability of Circular RNA in Glioma Cells

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Normal human astrocytes (NHA) and glioma cell lines (T98G and U251) were purchased from Bena Culture Collection (Beijing, China). Cells were grown in DMEM (Procell, Wuhan, China) containing 10% fetal bovine serum (Thermo Fisher, Wilmington, DE, USA), and 1% penicillin/streptomycin (Thermo Fisher) at 37°C in 5% CO2. To detect the stability of circ-TTBK2, cells were incubated with 1 μg/mL of Actinomycin D (Abcam, Cambridge, MA, USA) for different time points.
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6

Breast Cancer Cell Line Culture Protocols

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Breast cancer cell lines BT-549, MDA-MB-231, MDA-MB-468, and MCF-7 as well as an immortalized mammary epithelial-like cell line, MCF-10A were obtained from Procell biological company (Shanghai, China). BT-549 and MCF-7 cells were cultured in RPMI-1640 (Procell) supplemented with 10% (v/v) fetal bovine serum (FBS), 0.01 mg/mL insulin (Procell), 2 mM l-glutamine, 0.1 mg/mL streptomycin, and 100 U/mL penicillin at 37 °C in a humidified atmosphere containing 5% CO2. MDA-MB-231 and MDA-MB-468 cells were cultured in Leibovitz's L-15 (Gibco) with 10% (v/v) FBS, 2 mM l-glutamine, 0.1 mg/mL streptomycin, and 100 U/mL penicillin at 37 °C in a standard humidity incubator. MCF-10A was cultured in DMEM (Procell) supplemented with 5% horse serum, 20 ng/mL epidermal growth factor, 0.5 μg/mL hydrocortisone, 0.1 mg/mL streptomycin, 100 U/mL penicillin, and 0.01 mg/mL insulin at 37 °C in a humified atmosphere containing 5% CO2.
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7

Isolation of Adipose Tissue Fractions

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Isolation of mice primary stromal vascular fractions (SVF) and mature adipocytes was performed as reported previously49 (link). eWAT (epidydimal white adipose tissue) was separated from male mice, and washed in PBS with 1% PS. Then put the chopped tissue in 2 mg/ml collagenase type 2 (C6885, Sigma-Aldrich) in digestion buffer (0.4 g/ l KCl, 0.06 g/l KH2PO4, 8 g/l NaCl, 0.09 g/l Na2HPO4•·7H2O, 1 g/l glucose, 1.2 mM CaCl2, 1 mM MgCl2, 0.8 mM ZnCl2, 3% BSA) for 30 min at 37 °C in a shaker (140 rpm). Adding an equal volume of DMEM (Procell Life Science&Technology Co.,Ltd) containing 10% fetal bovine serum (FBS) to stop the digestion of collagenase. The cell suspension was centrifugated at a speed of 300 g for 5 minutes. Mature adipocytes exist in the supernatant, and SVF cells exist in the precipitates. Resuspending the pelleted cells and supernatant, respectively, and filtered through sterile 100 mm mesh filters. Then the SVF cells or mature adipocytes were plated on 6-well plates (NEST Biotechnology Co. Ltd (Wuxi, China)) in DMEM containing 10% FBS and 1% P/S at 37 °C in a humidified 5% CO2 incubator.
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8

Murine Vascular Smooth Muscle Cell Starvation

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Cells), MOVAS (Murine Aortic Vascular Smooth Muscle Cells) and Raw264.7 cells were obtained from the Chinese Academy of Sciences Committee on Type Culture Collection Cell Bank (Shanghai, China). Cells were cultured in 90% Dulbecco's-modified Eagle's medium (DMEM, Procell, Wuhan, Hubei, China) supplemented with 10% fetal bovine serum (HAKATA, Shanghai, China), 100 U/mL penicillin and 100 mg/mL streptomycin (Beyotime, Shanghai, China) at 37 ℃with 5% CO 2 incubator.
STS (Short-term starvation) was supplemented with 0.5 g/L glucose and 1% FBS in DMEM sugar-free medium (Procell, Wuhan, Hubei, China) [26] (link) . Since it was established by the investigators based on a FMD of 1-2 days per week (energy reduction to 20-25% on fasting days), we used STS as a cellular model for IF. Cells were cultured in DMEM high sugar complete medium in Petri dishes for 2-3 days, and then switched to the STS solution described above and continued to culture for 16-24 h.
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9

Cell Viability Assay with CCK-8

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Cell viability was detected using a CCK-8 kit (Topscience, Shanghai, China). R28 cells were seeded in into 96-well culture plates (5 × 103 cells/well). Cells were cultured with in DMEM (Procell) and 10% FBS containing glutamate or SB202190 for 24 hours. The culture medium was removed and 10% CCK-8 solution was added. Cells were then incubated at 37°C for 3 hours and analyzed at 450 nm with a Synergy LX multi-detection microplate reader (BioTek, Covina, CA, USA). Cell viability was calculated using the following formula: relative cell viability (%) = (absorbance at 450 nm of treated group – absorbance at 450 nm of blank)/(absorbance at 450 nm of control group – absorbance at 450 nm of blank) × 100.
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10

Cell Culture and Differentiation Protocol

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The HaCaT (iCell-h066) and THP-1 human monocytic leukemia (THP-1 cells, iCell-h213) cell lines were purchased from iCell Bioscience Inc. (Shanghai, China). The cells were cultured in Dulbecco’s modified Eagle medium (DMEM) (PM150210; Procell, Wuhan, China) supplemented with 10% fetal bovine serum (42G3279K; Gibco, Beijing, China) and 100 U/mL penicillin/streptomycin (15140122; Gibco, Beijing, China) in an incubator at 37 °C with 5% CO2. THP-1 cells were differentiated into macrophages by treating them with 100 ng/mL phorbol 12-myristate 13-acetate (HY-18739; PMA, MedChemExpress, Monmouth Junction, NJ, USA) for 48 h prior to exosome uptake.
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