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7 protocols using cosmosil 75c18 prep

1

Isotope Labeling and NMR Analysis

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Sodium [1-13C]acetate, [1-13C]acetate, sodium [1-13C]propionate, and [1,4-13C2]succinic acid were purchased from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA). 13C NMR spectra were obtained on a Bruker AVANCE 400 spectrometer (Bruker BioSpin K.K., Yokohama, Japan). Cosmosil 75C18-PREP (Nakalai Tesque, Inc., Kyoto, Japan, 70 μm) was used for ODS column chromatography. HPLC separation was performed using a Cosmosil 5C18-AR-II (Nacalai Tesque Inc., 20 × 250 mm, Kyoto, Japan) with a photodiode array detector.
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2

Spectroscopic Characterization of Compounds

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Optical rotations were measured using a JASCO P-1030 polarimeter. UV spectra were recorded on a Shimadzu UV-1800 UV–vis spectrophotometer. IR spectra were measured on a PerkinElmer Spectrum 100. NMR spectra were obtained on a Bruker AVANCE II 500 or AVANCE NEO 500 spectrometer in DMSO-d6 or CDCl3, and referenced to the residual solvent signals (δH 2.50, δC 39.5 for DMSO-d6; δH 7.26, δC 77.2 for CDCl3). HR–ESI–TOFMS spectra were recorded on a Bruker micrOTOF spectrometer. Silica gel 60 (spherical) (Kanto Chemical Co., Inc.) was used for silica gel column chromatography. Cosmosil 75C18-PREP (Nacalai Tesque, Inc.) was used for ODS column chromatography. Routine HPLC separations were performed on an Agilent HP1200 system, and chiral HPLC analysis was done on a Shimadzu Prominence UFLC system composed of a DGU-20A3R degasser, an SPD-20A UV detector, and an LC-20AD pump, which is connected to a C-R8A Chromatopac data processor.
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3

Spectroscopic Analysis of Compounds

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Optical rotations were measured on a JASCO P-2200 polarimeter in a 0.5-dm cell. UV spectra were obtained with a Shimadzu BioSpec-mini spectrophotometer. The ECD spectra were measured on a JASCO J-720W spectropolarimeter in a 10-mm cell. The IR spectra were measured on a JASCO FT/IR-4100 Fourier transform infrared spectrometer using a KBr disk. The NMR spectra were measured on a JEOL ECA-500 spectrometer with deuterated solvent used as the internal reference. The 1H NMR spectra were measured at 500 MHz, and the 13C NMR spectra were measured at 125 MHz. HRESIMS was conducted using a Q-Exactive Hybrid Quadrupole Orbitrap mass spectrometer. Diaion HP-20 (Mitsubishi Chemical Corporation, Tokyo, Japan), Silica gel (Chromatorex PEI MB 100–40/75, Fuji Silysia Chemical Ltd., Aichi, Japan), and ODS (Cosmosil 75C18-PREP, Nacalai Tesque, Inc., Kyoto, Japan) were used for column chromatography. For preparative HPLC, a Waters 515 HPLC pump, equipped with an ERC RefractoMax520 differential refractometer detector and a Shimadzu SPD-10A UV-vis detector were used. For reversed-phase HPLC separations, a RP-C18 silica gel column (YMC-Actus Triart C18, 5 μm, 150×20 mm) was used, at a flow rate of 8.0 mL/min.
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4

Blueberry Polyphenol Extraction and Analysis

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The lyophilized blueberry powders were subjected to extraction with a mixed solvent (MeOH:H2O:acetic acid = 85:15:0.5); then, the extracts were purified using solid-phase extraction (SPE) cartridges with a 60-mL tube (Supelco, Milwaukee, WI, USA) filled with C-18 (Cosmosil 75 C18-PREP; Nacalai Tesque, Kyoto, Japan). The cartridge was equilibrated with 100 mL MeOH and washed with 100 mL 0.2% formic acid in H2O. The blueberry extract was loaded onto the column and washed with 100 mL 0.2% formic acid in H2O. Then, the polyphenol-enriched fraction was collected by washing the column with 100 mL 0.2% formic acid in MeOH. Finally, the sample was dried under nitrogen flow.
The dried sample was ready for DPPH assay, enzyme-linked immunosorbent assay, and the expression of miR-21, miR-125b, and miR-146a.
For the HPLC/MS2 analyses, the dried sample was reconstituted with 0.2 mg extract/mL in MeOH.
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5

Purification and Characterization Methods

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Cosmosil 75C18-PREP (Nacalai Tesque Inc., 75 µm) was used for ODS flash chromatography. NMR spectra were obtained by a Bruker AVANCE 500 spectrometer at 500 MHz for 1H. Residual solvent peaks at δHC 7.27/77.0 ppm in CDCl3 were used as chemical shift reference signals. HRMS–ESI–TOF and LC–MS analyses were carried out by an Agilent 1200 HPLC-DAD system coupled with a Bruker micrOTOF mass spectrometer. Optical rotation and UV spectra were recorded on a JASCO DIP-3000 polarimeter and a Hitachi U-3210 spectrophotometer, respectively.
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6

Isolation and Characterization of N-Cinnamoylindolylmethylamine from Barley Roots

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The roots (1.5 kg) of barley ‘Shunrei’ seedlings were inoculated with F. culmorum and incubated at 23 °C with a 14-h photoperiod. After 72 h, the root metabolites were extracted in 80% methanol for 24 h, and the obtained extract was evaporated in vacuo. The resulting residue was subjected to ODS column chromatography (Cosmosil 75C18-PREP; Nacalai Tesque, Kyoto, Japan), using 20%, 40%, 50%, 60%, 70%, and 80% methanol. Because 3 was eluted in both the 50% and 60% methanol fractions, the two fractions were combined, evaporated to dryness, and subjected to silica gel column chromatography, using mixtures of acetone and hexane (20%, 30%, 40%, 50%, and 60% acetone; 1.0 L each). Because compound 3 was detected in both the 30 and 40% acetone fractions, the two fractions were concentrated, and the resulting residue (35.8 mg) was dissolved in methanol and then subjected to preparative HPLC. Conditions were as follows: column, Cosmosil 5C18-AR-II 10 mm × 250 mm; solvents, water (A) and acetonitrile (B); elution, 40% B/(A+B); flow rate, 7.0 mL/min, detection, 280 nm; column temperature, 40 °C. Compound 3 was eluted at 31.1 min.
Compound 3 (N-cinnamoyl-(1H-indol-3-yl)methylamine) 2.6 mg, HR MS (positive ESI): m/z 277.1331 [M+H]+ (calcd. for C18H17ON2, m/z 277.1341); UV-Vis (acetonitrile-water containing 0.1% formic acid): λmax 220 and 280 nm; 1H- and 13C-NMR data are shown in Table 1.
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7

Extraction and Purification of U. lactuca Compounds

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U. lactuca powder (500× g) was extracted twice at 40 °C for 4 h with 70% methanol (2 L) using an extractor (KSNP B1130-240L, Kyungseo, Incheon, Korea). The methanolic extract was concentrated under reduced pressure, followed by adsorption onto Diaion HP-20 resin (Mitsubishi Chemical Co., Tokyo, Japan) with stirring for 3 h. After filling the adsorbed resin into the column, the column was washed with distilled water and sequentially eluted with 2 L of 30%, 70%, and 100% methanol. The 30% methanol fraction was concentrated and sequentially eluted with 0–100% methanol using ODS flash column chromatography (Cosmosil 75C18-prep, Nacalai Tesque, Tokyo, Japan). Methanol (30%) fraction was concentrated and sequentially eluted with 50% methanol using Sephadex LH-20 column chromatography (GE Healthcare Life Sciences, Uppsala, Sweden). The three fractions were eluted using Sephadex LH-20 column chromatography.
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