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5 protocols using pmxs nanog

1

Overexpression of Pluripotency Factors

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Doxcyclin (Dox) and Jak inhibitor (Jaki) were purchased from Merck Millipore (Billierica, MA, USA). CHIR99021 and PD0325901 were purchased from SelleckChem (Houston, TX, USA). The LIF neutralizing antibody (LIFAb) was from R&D Systems. The retro- and lenti-viral vectors including pMXs-Nanog, and FUW- M2rtTA, and the viral packaging plasmids PUMVC, psPAX2 and pCMV-VSV-G (Stewart et al., 1992 (link)) were all obtained from Addgene (Cambridge, MA, USA). FUW-TetO-Esrrb and pMXs-Stat3C were described previously (Tang et al., 2012 (link), 2014 (link)). Nr5a2 cDNA was PCR amplified using primers (forward primer: 5′-AGTTAATTAAGGATCCATGTCTTCTAATTCAGATACTGGGG-3′ and reverse primer: 5′-ACTGTGCTGGCGGCCGCTTATGCTCTTTTGGCATGCAAC-3′) and cloned into linearized pMXs vectors (Cell Biolabs, San Diego, CA, USA) using the In-Fusion kit (Clontech Inc., Mountain View, CA, USA). Lenti- and retro-viruses were prepared with 293T cells according to the protocol from Addgene and filtered with 0.8 μm filters.
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2

Generation of Induced Pluripotent Stem Cells

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The pMXs Oct4, pMXs Sox2, pMXs Klf4 and pMXs Nanog plasmids were obtained from Addgene. Dppa2, Sall4 and lin28 were amplified from a mESC cDNA library via PCR and were cloned into the pMXs vector, which resulted in the addition of an HA tag at the C terminus of the protein. Plat E cells were transfected with the pMXs vectors. The cells were then incubated overnight, and the medium was replaced with fresh medium. The virus-containing supernatants were collected 48 h after transfection and were concentrated using Retro-Concentin (SBI). Low-passage MEFs (p 1–3) were seeded 12 h prior to infection. The infections were performed in F.Gro medium, without vitamin C, that was supplemented with 4 mg/ml polybrene (Millipore) and equal amounts of each viral concentrate. After overnight incubation, the cells were washed with PBS. According to the mES protocol, 3 ml of mESC medium was added. According to the LS/2i protocol, the infected cells were maintained in F.Gro medium without vitamin C, and the medium was replaced with 2i medium 3 days after treatment. The iPSC colonies were isolated based on the expression of Oct4-GFP and ESC morphology.
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3

Generation of iPSC Lines from Fibroblasts

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The iPSC-WT cell line was derived from MRC-5 fibroblasts (ATCC), and the iPSC-DS clones were derived from AG06872 fibroblasts (Coriell). The fibroblasts were transduced with retroviral vectors (pMXs-cMyc, pMXs-Nanog, pMXs-hOct3-4, and pMXs-Sox2; Addgene) to overexpress Oct4, Sox2, Nanog, and c-Myc transgenes. The retroviral vectors were produced by transient transfection of 293T cells. Following this, the fibroblasts were incubated for 4 h in the viral supernatants containing 5 μg/mL polybrene (Sigma). The transduced cells were then incubated for 3 weeks until development of the pluripotent clones. After isolation, the clones were grown in StemPro medium (Invitrogen) on a Matrigel® substrate (BD Biosciences). The cultures were split mechanically using the StemPro EZ Passage tool (Invitrogen).
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4

Plasmid Utilization in Cellular Studies

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Plasmids used were pBABE-YAP1 (#15682, Addgene), pMXs-NANOG (#13354, Addgene), and pBABE- β-catenin S33Y HA (courtesy of Dr. Been Ze’ev, the Weizmann Institute, Rehovot, Israel). pCMV-HBx HA (courtesy of Dr. Jing-Hsiung Ou, University of Southern California, Department of Molecular Microbiology and Immunology) was also used.
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5

Transcriptional Regulation by Nanog and Oct4

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NIH/3T3 cells were co-transfected in 24-well plate with 300 ng of pSod2.1-Luc or pSod2.2-Luc reporters and 0, 100, 200 or 400 ng of pMXs-Nanog and/or pMXs-Oct4 (Addgene). Transfection was carried out using PEI (Linear Polyethylenimine 25 kDa, Polysciences, Inc.) with a DNA/PEI ratio of 1:3. For normalization of transfection efficiency, 20 ng of pRL-TK reporter (Promega), constitutively expressing the Renilla reniformis luciferase, was included in each transfection assay. After ON incubation, the medium was replaced by fresh medium. After 24 h, cells were lysed and assayed for luciferase activity using the Dual Luciferase kit (Promega) on a GloMax Multi Detection System (Promega). Experiments were performed in triplicate and repeated at least three times.
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