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9 protocols using easysep human na ve cd4 t cell isolation kit 2

1

Isolation of Naive and Memory CD4+ T Cells

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Human blood samples were collected from OneBlood (Orlando, FL) and processed in accordance with protocols approved by Institutional Review Boards at Scripps Florida. Peripheral blood mononuclear cells (PBMCs) were isolated from healthy donor buffy coats by Ficoll-Paque (Sigma) density gradient centrifugation. Naïve CD4+ T cells or effector memory CD4+ T cells were separated using the EasySep Human Naïve CD4+ T cell isolation kit II or EasySep Human Memory CD4+ T cell Enrichment Kit, respectively (STEMCELL Technologies, Canada) according to the manufacturer’s instructions. Cell purity of >95% was obtained in the majority of donors for the experiments. For UC/healthy donor samples, frozen PBMCs were thawed and incubated overnight in fresh media. Cell viability was assessed the following day following by isolation of naïve CD4+ T cells following methods outlined above.
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2

Isolation of CD14+ Monocytes and Naive CD4+ T Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated from buffy coats (Etablissement Français du Sang) by Ficoll-Hypaque gradient centrifugation (specific gravity, 1.077 g/mL; Amersham Biosciences, USA) density.CD14+ cells were positively separated by anti-CD14 magnetic beads according to the Manufacturer’s instructions (EasySep™ Human CD14 Positive Selection Kit II, Stemcell technologies). Isolated cells routinely contained more than 95% of CD14+ cells. Naive CD4+ T cells were isolated from PBMCs using EasySep™ Human Naïve CD4+ T Cell Isolation Kit II (Stemcell technologies). The cell population obtained, contained >95% of CD3+ CD4+ CD45RA+ CD45RO cells, as assessed by flow cytometry.
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3

Isolation of Naïve CD4+ T Cells

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Blood samples were obtained from the Biological Specialty Corporation, PA. Mononuclear cells were prepared from the buffy coats from healthy adult donors on Ficoll-paque plus gradients. Naïve CD4+ T cells were further isolated by using EasySep Human naïve CD4+ T cell isolation kit II (Cat. # 17555, Stemcell Technologies) according to the manufacture’s instruction. The purity of naïve CD4+ T cells (CD3+CD4+CD45RA+CD45RO) was around 95%.
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4

Isolation of Naïve CD4+ T Cells

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The CD4+ naïve T cells were isolated from PBMC on the same day of device assembly (see details below). In brief, PBMCs were thawed in a 37° C water bath for approximately 1 minute before diluting 1:10 in PBS-HIFBS. After that dilution in the isolation buffer, centrifugation at 300 g for 5 min and 4°C was performed, and the isolation buffer was removed from the cell pellet. The cell pellet was then resuspended in 1 mL of PBS-HIFBS and transferred into a 5-ml round-bottom polystyrene tube (StemCell, 100-0088). An additional 1.5 mL PBS-HIFBS was used to recover the residual cells and transferred into the same polystyrene tube. Naïve CD4+ T cells were isolated using the EasySep Human Naïve CD4+ T Cell Isolation Kit II (StemCell, 17555) and EasySep Magnet (StemCell, 18000). Once isolated, the naïve CD4+ T cells were pelleted and resuspended in 1 mL of RPMI 1640 supplemented with 10% HIFBS (RPMI-HIFBS) and ready for use. Cells were counted via Trypan Blue and Countess II Automated Cell Counter, and 60,000 naïve CD4+ T cells were used in each well in circulation.
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5

SARS-CoV-2 T cell Recall Responses

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PBMC (2×106) were primed with viral antigens (1ug/ml SARS-CoV-2 spike protein, 1ug/ml SARS-CoV-2 nucleocapsid protein, 1ug/ml EBV Glycoprotein gp350) in RPMI 1640 medium supplemented with 10% FBS for 5 days. For recall responses, antigen-stimulated PMBC were washed on Day 5 and kept in antigen-free medium for 24 hours to remove the antigens. On Day 6, primed PBMC were mixed with syngeneic macrophages (2×105) that had been loaded with antigen by overnight culture. Six hours later, T cell activation was measured by flow cytometry staining for the surface receptors CD69 and CD40L. IFN-γ production in the supernatant was quantified with the IFN-γ High Sensitivity Human ELISA Kit assay system (abcam). Supernatants were collected after 24 hrs of antigen rechallenge. Naïve and memory CD4+ T cells were isolated by negative selection with EasySep Human Naïve CD4+ T Cell Isolation Kit II (STEMCELL Technologies, #17555) and EasySep Human Memory CD4+ T Cell Enrichment Kit (STEMCELL Technologies, #19157) repectively.
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6

Naive T Cell Activation and Cytokine Profile

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Naïve CD4+ or CD8+ T cells were isolated with EasySep Human Naïve CD4+ T Cell Isolation Kit II (Stemcell Technologies) or EasySep Human Naïve CD8+ T Cell Isolation Kit II (Stemcell Technologies), respectively, as described in the manufacturer’s instruction. Purified T cells were labeled with CFSE (5 µM; Life Technologies) for 15 min at 37 °C. Afterward T cells and DCs of HLA-mismatched donors were cocultured in different ratios. DCs were stimulated either with R848 (1 µg/mL) or pIC (1 µg/mL). After 6 d, T cells were restimulated with 50 ng/mL PMA and 500 ng/mL Ionomycin for 6 h in presence of 5 µg/mL Brefeldin A. T cells were harvested and analyzed by flow cytometry for activation (CD25) markers and intracellular cytokines [IL-2, IL-4 (CD4+ T cells only), IL-10 (CD4+ T cells only), IL-17A (CD4+ T cells only), IFNγ, and TNFα]; more details are available in SI Appendix. Acquisition of the samples was performed using a BD LSRFortessa, and data were analyzed using FlowJo.
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7

Treg and Th17 Induction Protocol

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The subpopulation of CD4+ T lymphocytes was purified by immunomagnetic negative isolation using the EasySep™ human naïve CD4+ T Cell Isolation Kit II (Stem cell, Canadian). The naïve CD4+ T cells were seeded at density of 3×105 cells/well in a 96-well plate. The cells were then transfected either with mock control or with miR-30e-5p mimic or inhibitor obtained from RiboBio (Guangzhou, China) using Entranster™-R4000 Transfection reagent from Engreen (Beijing, China). The cells were then harvested and activated by plate-bound anti-CD3 (2 μg/ml) and anti-CD28 (2 μg/ml) antibodies, with the addition of recombinant human TGF-β (5 ng/ml) and IL-2 (5 ng/ml) to induce Treg cell conversion or human IL4 (10 μg/ml), IFN-γ (10 μg/ml), TGF-β (2.5 ng/ml), IL-6 (10 ng/ml), and IL-23 (10 ng/ml) to induce Th17 cell conversion. In some cultures, RvD1 (10 nM) was added once a day for 4 days. Cells were collected for measurement of Treg or Th17 cells on the fifth day.
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8

Isolation and Expansion of Primary Human T-Cells

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Human donor buffy coats were purchased from Stanford Blood Center, and PBMCs were isolated by centrifugation in Lymphoprep™ density gradient medium (Stemcell Technologies Cat# 07811). The plasma layer was discarded, the white mononuclear cell layer was decanted and washed twice with cold PBS + 2% FBS, and cell count and viability were determined.
For preparation of lymphocyte subsets, naïve CD4+ T-cells were isolated via two-stage negative selection with EasySep™ Human Naïve CD4+ T-Cell Isolation Kit II (Stemcell Technologies Cat# 17555); and CD8+ T-cells were isolated by negative selection from PBMCs with Stem Cell Technology Easy Sep CD8+ kit, or obtained freshly prepared from Stanford Blood Center. Rested naïve CD4+ T-cells or CD8+ T-cells were prepared by overnight incubation at 37°C, 5% CO2 in CTS™ OpTmizer™ T-Cell Expansion SFM (ThermoFisher Scientific Cat# A1048501).
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9

Isolation of Naive and Memory CD4+ T Cells

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Naïve CD4+ T cells from the spleens of C57BL/6 WT mice were purified with Naïve CD4+ T cell Isolation Kit according to the manufacturer’s (Miltenyi Biotec) instructions. Peripheral blood mononuclear cells (PBMCs) were purified from buffy coats by gradient centrifugation with histopaque (density: 1.077 g/ml). Naïve CD4 T cells were purified from PBMCs using EasySep Human Naïve CD4+ T cell Isolation Kit II (STEMCELL Technologies). Memory CD4 T cells were purified from PBMCs using EasySep Human Memory CD4+ T cell Isolation Kit (STEMCELL Technologies).
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