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27 protocols using hydroxychloroquine sulfate

1

Comprehensive Immunoblot Analysis

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The antibodies to CA9, p-RelA, RelA, p-IKKβ, IKKβ, p-IκBα, IκBα, LDH, HIF1α, SQSTM1, cleaved-caspase-3, cleaved-PARP1, NRF2, and actin were obtained from Cell Signaling Technology. The antibodies to GPX4 and CA9 were obtained from Abcam. The antibodies to LC3, MLKL, RIPK3, OPRL1, OPRM1, and HMGB1 were obtained from NOVUS. Desferrioxamine, β-mercaptoethanol, N-acetyl-l-cysteine, N-Acetyl-l-alaine, hydrogen peroxide solution, gemcitabine hydrochloride, sulfasalazine, cobalt chloride, cycloheximide, tocopherol, necrosulfonamide, hydroxychloroquine sulfate, EDTA, cytochalasin B, cytochalasin D, paclitaxel, crystal violet, protease inhibitor cocktail, Z-VAD-FMK, TNF, staurosporine, cycloheximide, and lipopolysaccharides were obtained from Sigma-Aldrich. Erastin, ferrostatin-1, lapatinib, JTC801, and compound libraries were obtained from Selleck Chemicals. BANORL24, SB612111, UFP101, and Trap101 were obtained from Tocris Bioscience.
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2

Metabolite Extraction and Analysis

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All solvents and reagents used for metabolite extraction and analysis by LC/MS and DESI imaging were of LC/MS grade. Acetonitrile, methanol and water were purchased from Honeywell (Charlotte, NC, USA), and ammonium bicarbonate, methylenediphosphonic (medronic) acid, ammonium hydroxide and formic acid were purchased from Sigma-Aldrich. The sodium carboxymethylcellulose (CMC) used for preparing zebrafish for DESI imaging was purchased from Sigma-Aldrich. Hydroxychloroquine sulfate was pharmaceutical grade and purchased from Sigma-Aldrich, 13C6-glucose was purchased from Cambridge Isotopes (Tewksbury, MA, USA), and penicillin-streptomycin was purchased from Life Technologies (Carlsbad, CA, USA). The labeled HCQ-D4 internal standard used for absolute quantitation was purchased from Cayman Chemical (Ann Arbor, MI, USA).
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3

Multiplex Cytokine Analysis in Mice

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Hydroxychloroquine sulfate was purchased from Sigma-Aldrich (USA). TRIzol Reagent, TURBO DNA-free™ Kit, and SuperScript II Reverse Transcriptase were purchased from Thermo Fisher Scientific (USA). TB Green Premix EX Tap™ II (Tli RNaseH Plus) was purchased from TaKaRa (JAPAN). A Mouse Th1/Th2/Th9/Th17/Th22/Treg Cytokine Panel (17plex) was obtained from eBioscience (USA). All other chemicals and materials were obtained from local commercial sources.
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4

Cell Culture and Compound Characterization

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Vero E6
and A549-ACE2 cells were cultured in Dulbecco’s modified Eagle’s
medium (DMEM) supplemented with 10% fetal bovine serum (FBS) and 1%
penicillin–streptomycin. In the case of Calu-3 cells, the medium
was also supplemented with 1% non-essential amino acids and 1% sodium
pyruvate. All cell lines were obtained from Otwo Biotech Corporation
and incubated at 37 °C with 5% CO2. Lipo8000 (Beyotime,
China) and pcDNA3.1-ACE2-Flag (Beyotime, China) were used for transfection.
The expression of ACE2 was tested by western blot (Figure S3). Chloroquine diphosphate salt was purchased from
Sigma-Aldrich (San Louis, MO, C6628; purity, 98.5–101.0%).
Hydroxychloroquine sulfate was purchased from Sigma-Aldrich (San Louis,
MO, 90527; purity, ≥95%). Favipiravir was purchased from Topscience
(China, T6833; purity, ≥98%). Remdesivir was purchased from
Cayman Chemical (Ann Arbor, MI, 30354; purity, ≥98%). GS-441524
was purchased from Selleck Chemicals (Houston, TX, S6814; purity,
≥99%). All chemicals were analyzed by HPLC (Figures S4–S8).
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5

Synthesis of Mefloquine Stereoisomers

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Chloroquine diphosphate (C6628), hydroxychloroquine sulfate (90527), amodiaquine dihydrochloride dihydrate (A2799) and primaquine bisphosphate (160393) were purchased from Sigma-Aldrich and solubilized in distilled water. Quinine (22620), mefloquine hydrochloride (M2319) and pamaquine naphthoate (S509515) were purchased from Sigma-Aldrich and solubilized in dimethyl sulfoxide. G418 was purchased from MicroCombiChem. Mefloquine stereoisomers (+)-anti-mefloquine hydrochloride [(+)-1] and (-)-syn-mefloquine hydrochloride [(-)-2] were synthesized and purified as described [16 (link),17 (link)]. Mefloquine stereoisomers (-)-anti-mefloquine hydrochloride [(-)-1] and (+)-syn-mefloquine hydrochloride [(+)-2] were synthesized in an analogous manner (Fig 1). Briefly, compound 5 was prepared via coupling of 3 and 4. Using known synthetic procedures, 5 was converted to diol 6 by treatment with ADmix α, which was then converted to (+)-1 using a three-step sequence. (–)-2 was also generated from 6 in three steps, but using a different synthetic sequence. (–)-1 and (+)-2, the enantiomeric forms of (+)-1 and (–)-2, respectively, were prepared in an analogous way, but using Admix β.
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6

Antiviral Screening of Methylene Blue, Hydroxychloroquine, and Remdesivir

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Methylene blue (methylthioninium chloride; Proveblue®) was provided by Provepharm SAS (Marseille, France). Hydroxychloroquine sulfate (Sigma Aldrich, St Quentin Fallavier, France) and remdesivir (Apollo Scientific, Manchester, UK) were used as comparators. Stock solutions of methylene blue and hydroxychloroquine were prepared in water and remdesivir in DMSO/water 10%. All the stock solutions were then diluted in Minimum Essential Media (MEM, Gibco, ThermoFischer, Waltham, MA, USA) in order to have 7 final concentrations ranging from 0.1 µM to 100 µM. Two clinically-isolated SARS-CoV-2 strains (IHUMI-3 and IHUMI-6), collected in hospitalized patients during the first COVID-19 outbreak in March 2020 in Marseille [29 (link)], were maintained in production in Vero E6 cells (American type culture collection ATCC® CRL-1586™) in MEM with 4% of fetal bovine serum and 1% of glutamine (complete medium). Vero E6 cells are one of the most used cells for the culture of SARS-CoV-2 due to the presence of high expression of angiotensin converting enzyme 2 (ACE2) receptors, essential for SARS-CoV-2 cellular entry [30 (link),31 (link)]. Vero E6 cells were found to be relevant for antiviral drug screening models [31 (link),32 (link)].
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7

Investigating AXL Inhibition and ACE2 Modulation in NSCLC

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393P-Zeb1–inducible murine NSCLC cells were treated with AXL inhibitor, bemcentinib (0.5 μM), or DMSO for a total of 24 hours (8-h pretreatment with bemcentinib or DMSO, followed by induction of Zeb1 with doxycycline [2 μg/mL], and an additional 16-h drug treatment). Five NSCLC cell lines with varying levels of ACE2 were treated with hydroxychloroquine sulfate (Sigma) for 48 hours. Cell lysates were harvested for Western blot or reverse-phase protein array (RPPA) analysis. Antibodies used for Western analysis include ACE2 (MA5-32307, ThermoFisher), GLUL (80636, Cell Signaling Technology), Vimentin (3932, Cell Signaling Technology), ZEB1 (3396, Cell Signaling Technology), and vinculin (Sigma, V9131) as a loading control. The cell line drug-screening data were generated internally. Three measurements were performed for each drug at each concentration to produce dose-response data and determine concentration that inhibits 50 % value.
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8

Immunoassay for Malaria Drugs

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Amodiaquine, N-desethyl-Amodiaquine, quinine, piperaquine, hydroxychloroquine sulfate, mefloquine, and lumefantrine standards were purchased from Sigma (St Louis, MO, USA). Artemisinin, dihydroartemisinin, artesunate, and artemether standards were purchased from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). Pyrimethamine standard was purchased from Aladdin (Shanghai, China). Horseradish-peroxidase (HRP) labeled goat anti-mouse IgG, bovine serum albumin (BSA), ovalbumin (OVA), o-phenylenediamine (OPD), 1-(3-Dimethyl amine propyl)3-ethylcarbodiimide (EDC), N-hydroxy succinimide (NHS), complete and incomplete Freund’s adjuvant were obtained from Sigma (St Louis, MO, USA). The AS mAb (3D82G7) was produced in our laboratory [21 (link)]. The HAT-sensitive Balb/c mouse myeloma cell line SP2/0 was obtained from the China Institute of Veterinary Drug Control (Beijing, China). Cell culture medium (Dulbecco’s modified Eagle’s medium, DMEM) and fetal bovine serum (FBS) were obtained from Gibco BRL (Paisley, Scotland). All other chemicals and organic reagents were of analytical grade and bought from Sinopharm Chemical Reagent (Beijing, China). The Sprague Dawley (SD) and Balb/c mice were purchased from the Institute of Genetics and Developmental Biology (Beijing, China).
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9

Quantitative Analysis of Hydroxychloroquine

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Hydroxychloroquine sulfate, carbamazepine, acetonitrile, methanol, HPLC grade water, formic acid were obtained from Sigma Aldrich (St. Louis, MO, USA), desethylhydroxychloroquine and bidesthylchloroquine were obtained from Cayman Chemical (Ann Arbor, MI, USA) and LGS standards (Manchester, NH, USA), respectively.
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10

Cell Line and Reagent Acquisition

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Parental COS-7 cells and HEK293 cells were purchased from ATCC (Manassas, VA, USA). Hydroxychloroquine Sulfate and Chloroquine Disulfate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Membrane-impermeable biotinylation reagent sulfo-NHS-SS-biotin, streptavidin agarose, protein G-agarose beads, and horseradish peroxidase-conjugated anti-mouse antibodies were obtained from Pierce Biotechnology (Rockford, IL, USA). We purchased [3H]-labeled estrone sulfate from PerkinElmer (Waltham, MA, USA). Mouse anti-myc antibody (9E10) was purchased from Roche (Indianapolis, IN, USA). Mouse anti-E-cadherin antibody was purchased from Abcam (Cambridge, MA, USA). Mouse anti-ubiquitin antibody, mouse anti-β-actin antibody and normal mouse IgG were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). A 20S proteasome assay kit was purchased from Sigma-Aldrich (St. Louis, MO, USA). Normal mouse lgG, mouse monoclonal anti-ubiquitin and mouse monoclonal anti-β-actin antibodies were purchased from Santa Cruz (Santa Cruz, CA, USA).
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